Gene : Seita.4G204300 S. italica v2.2
Defline:  (1 of 1) PTHR22967//PTHR22967:SF60 - SERINE/THREONINE PROTEIN KINASE Genomic Order:  2043
Name:  ? Seita.4G204300 Secondary Identifier:  ? PAC:32707215
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G204300 0.5kb upstream 0.5kb upstream 4441 true scaffold_4: 32216356-32220796 Setaria italica
Seita.4G204300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 32220297-32220796 Setaria italica
Seita.4G204300 0.5kb downstream 0.5kb downstream 4441 true scaffold_4: 32215856-32220296 Setaria italica
Seita.4G204300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 32215856-32216355 Setaria italica
Seita.4G204300 1.0kb upstream 1.0kb upstream 4941 true scaffold_4: 32216356-32221296 Setaria italica
Seita.4G204300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 32220297-32221296 Setaria italica
Seita.4G204300 1.0kb downstream 1.0kb downstream 4941 true scaffold_4: 32215356-32220296 Setaria italica
Seita.4G204300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 32215356-32216355 Setaria italica
Seita.4G204300 2.0kb upstream 2.0kb upstream 5941 true scaffold_4: 32216356-32222296 Setaria italica
Seita.4G204300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 32220297-32222296 Setaria italica
Seita.4G204300 2.0kb downstream 2.0kb downstream 5941 true scaffold_4: 32214356-32220296 Setaria italica
Seita.4G204300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 32214356-32216355 Setaria italica
Seita.4G204300 5.0kb upstream 5.0kb upstream 8941 true scaffold_4: 32216356-32225296 Setaria italica
Seita.4G204300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 32220297-32225296 Setaria italica
Seita.4G204300 5.0kb downstream 5.0kb downstream 8941 true scaffold_4: 32211356-32220296 Setaria italica
Seita.4G204300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 32211356-32216355 Setaria italica
Seita.4G204300 10.0kb upstream 10.0kb upstream 13941 true scaffold_4: 32216356-32230296 Setaria italica
Seita.4G204300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 32220297-32230296 Setaria italica
Seita.4G204300 10.0kb downstream 10.0kb downstream 13941 true scaffold_4: 32206356-32220296 Setaria italica
Seita.4G204300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 32206356-32216355 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187810 5267 Panicoideae View MSA
124580104 5269 Grass View MSA
122043407 5273 Angiosperm View MSA
121344619 5274 Embryophyte View MSA
123427772 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.803        
cufflinks 22.5     High  
cufflinks 27.946     High High
cufflinks 20.307     High  
cufflinks 15.418     High  
cufflinks 21.735     High  
cufflinks 19.643     High  
cufflinks 12.244        
cufflinks 8.869       Low
cufflinks 7.511       Low
cufflinks 15.985     High  
cufflinks 9.791       Low
cufflinks 15.062     High  
cufflinks 25.106     High High
cufflinks 18.111     High  
cufflinks 17.602     High  
cufflinks 10.722        
cufflinks 7.566       Low
cufflinks 33.932     High High
cufflinks 10.172        

0 Strain