Gene : Seita.4G204200 S. italica v2.2
Defline:  (1 of 2) PTHR12896 - PAX6 NEIGHBOR PROTEIN PAXNEB Genomic Order:  2042
Name:  ? Seita.4G204200 Secondary Identifier:  ? PAC:32707037
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G204200 0.5kb upstream 0.5kb upstream 3040 true scaffold_4: 32212632-32215671 Setaria italica
Seita.4G204200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 32212632-32213131 Setaria italica
Seita.4G204200 0.5kb downstream 0.5kb downstream 3040 true scaffold_4: 32213132-32216171 Setaria italica
Seita.4G204200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 32215672-32216171 Setaria italica
Seita.4G204200 1.0kb upstream 1.0kb upstream 3540 true scaffold_4: 32212132-32215671 Setaria italica
Seita.4G204200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 32212132-32213131 Setaria italica
Seita.4G204200 1.0kb downstream 1.0kb downstream 3540 true scaffold_4: 32213132-32216671 Setaria italica
Seita.4G204200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 32215672-32216671 Setaria italica
Seita.4G204200 2.0kb upstream 2.0kb upstream 4540 true scaffold_4: 32211132-32215671 Setaria italica
Seita.4G204200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 32211132-32213131 Setaria italica
Seita.4G204200 2.0kb downstream 2.0kb downstream 4540 true scaffold_4: 32213132-32217671 Setaria italica
Seita.4G204200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 32215672-32217671 Setaria italica
Seita.4G204200 5.0kb upstream 5.0kb upstream 7540 true scaffold_4: 32208132-32215671 Setaria italica
Seita.4G204200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 32208132-32213131 Setaria italica
Seita.4G204200 5.0kb downstream 5.0kb downstream 7540 true scaffold_4: 32213132-32220671 Setaria italica
Seita.4G204200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 32215672-32220671 Setaria italica
Seita.4G204200 10.0kb upstream 10.0kb upstream 12540 true scaffold_4: 32203132-32215671 Setaria italica
Seita.4G204200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 32203132-32213131 Setaria italica
Seita.4G204200 10.0kb downstream 10.0kb downstream 12540 true scaffold_4: 32213132-32225671 Setaria italica
Seita.4G204200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 32215672-32225671 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122064073 5267 Panicoideae View MSA
124363490 5269 Grass View MSA
122045892 5273 Angiosperm View MSA
121347057 5274 Embryophyte View MSA
123425330 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.007     Low  
cufflinks 0.005     Low Low
cufflinks 0.017     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.031     Low High
cufflinks 0.007     Low  
cufflinks 0.005     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.006     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.009     Low  
cufflinks 0.02     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low High
cufflinks 0.004     Low Low
cufflinks 0.017     Low  
cufflinks 0.013     Low  
cufflinks 0.008     Low  
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain