Gene : Seita.4G215600 S. italica v2.2
Defline:  (1 of 2) KOG4416 - Uncharacterized conserved protein Genomic Order:  2156
Name:  ? Seita.4G215600 Secondary Identifier:  ? PAC:32707618
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G215600 0.5kb upstream 0.5kb upstream 7804 true scaffold_4: 33394279-33402082 Setaria italica
Seita.4G215600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 33401583-33402082 Setaria italica
Seita.4G215600 0.5kb downstream 0.5kb downstream 7804 true scaffold_4: 33393779-33401582 Setaria italica
Seita.4G215600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 33393779-33394278 Setaria italica
Seita.4G215600 1.0kb upstream 1.0kb upstream 8304 true scaffold_4: 33394279-33402582 Setaria italica
Seita.4G215600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 33401583-33402582 Setaria italica
Seita.4G215600 1.0kb downstream 1.0kb downstream 8304 true scaffold_4: 33393279-33401582 Setaria italica
Seita.4G215600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 33393279-33394278 Setaria italica
Seita.4G215600 2.0kb upstream 2.0kb upstream 9304 true scaffold_4: 33394279-33403582 Setaria italica
Seita.4G215600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 33401583-33403582 Setaria italica
Seita.4G215600 2.0kb downstream 2.0kb downstream 9304 true scaffold_4: 33392279-33401582 Setaria italica
Seita.4G215600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 33392279-33394278 Setaria italica
Seita.4G215600 5.0kb upstream 5.0kb upstream 12304 true scaffold_4: 33394279-33406582 Setaria italica
Seita.4G215600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 33401583-33406582 Setaria italica
Seita.4G215600 5.0kb downstream 5.0kb downstream 12304 true scaffold_4: 33389279-33401582 Setaria italica
Seita.4G215600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 33389279-33394278 Setaria italica
Seita.4G215600 10.0kb upstream 10.0kb upstream 17304 true scaffold_4: 33394279-33411582 Setaria italica
Seita.4G215600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 33401583-33411582 Setaria italica
Seita.4G215600 10.0kb downstream 10.0kb downstream 17304 true scaffold_4: 33384279-33401582 Setaria italica
Seita.4G215600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 33384279-33394278 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176295 5267 Panicoideae View MSA
124572657 5269 Grass View MSA
122043018 5273 Angiosperm View MSA
121349470 5274 Embryophyte View MSA
123427558 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.288        
cufflinks 6.063        
cufflinks 4.566        
cufflinks 3.877       Low
cufflinks 4.013       Low
cufflinks 5.878        
cufflinks 5.292        
cufflinks 6.073        
cufflinks 4.876        
cufflinks 6.09        
cufflinks 6.847       High
cufflinks 5.828        
cufflinks 6.342        
cufflinks 4.773        
cufflinks 7.667       High
cufflinks 3.597       Low
cufflinks 6.45        
cufflinks 3.167       Low
cufflinks 4.628        
cufflinks 7.319       High

0 Strain