Gene : Seita.4G215500 S. italica v2.2
Defline:  (1 of 1) PTHR11474//PTHR11474:SF43 - TYROSINASE Genomic Order:  2155
Name:  ? Seita.4G215500 Secondary Identifier:  ? PAC:32706745
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6752 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G215500 0.5kb upstream 0.5kb upstream 2299 true scaffold_4: 33391675-33393973 Setaria italica
Seita.4G215500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 33391675-33392174 Setaria italica
Seita.4G215500 0.5kb downstream 0.5kb downstream 2299 true scaffold_4: 33392175-33394473 Setaria italica
Seita.4G215500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 33393974-33394473 Setaria italica
Seita.4G215500 1.0kb upstream 1.0kb upstream 2799 true scaffold_4: 33391175-33393973 Setaria italica
Seita.4G215500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 33391175-33392174 Setaria italica
Seita.4G215500 1.0kb downstream 1.0kb downstream 2799 true scaffold_4: 33392175-33394973 Setaria italica
Seita.4G215500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 33393974-33394973 Setaria italica
Seita.4G215500 2.0kb upstream 2.0kb upstream 3799 true scaffold_4: 33390175-33393973 Setaria italica
Seita.4G215500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 33390175-33392174 Setaria italica
Seita.4G215500 2.0kb downstream 2.0kb downstream 3799 true scaffold_4: 33392175-33395973 Setaria italica
Seita.4G215500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 33393974-33395973 Setaria italica
Seita.4G215500 5.0kb upstream 5.0kb upstream 6799 true scaffold_4: 33387175-33393973 Setaria italica
Seita.4G215500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 33387175-33392174 Setaria italica
Seita.4G215500 5.0kb downstream 5.0kb downstream 6799 true scaffold_4: 33392175-33398973 Setaria italica
Seita.4G215500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 33393974-33398973 Setaria italica
Seita.4G215500 10.0kb upstream 10.0kb upstream 11799 true scaffold_4: 33382175-33393973 Setaria italica
Seita.4G215500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 33382175-33392174 Setaria italica
Seita.4G215500 10.0kb downstream 10.0kb downstream 11799 true scaffold_4: 33392175-33403973 Setaria italica
Seita.4G215500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 33393974-33403973 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121994851 5273 Angiosperm View MSA
122197611 5267 Panicoideae View MSA
124585862 5269 Grass View MSA
121350975 5274 Embryophyte View MSA
123428097 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.221        
cufflinks 0.046     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 0.02     Low Low
cufflinks 0.013     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.112        
cufflinks 0.228     Low  
cufflinks 0.451        
cufflinks 0.183        
cufflinks 0.295        
cufflinks 0.013     Low Low
cufflinks 0.84       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.244        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.876       High

0 Strain