Gene : Seita.4G215100 S. italica v2.2
Defline:  (1 of 1) PTHR10210//PTHR10210:SF52 - RIBOSE-PHOSPHATE PYROPHOSPHOKINASE Genomic Order:  2151
Name:  ? Seita.4G215100 Secondary Identifier:  ? PAC:32708910
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY0-662 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G215100 0.5kb upstream 0.5kb upstream 4784 true scaffold_4: 33267302-33272085 Setaria italica
Seita.4G215100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 33267302-33267801 Setaria italica
Seita.4G215100 0.5kb downstream 0.5kb downstream 4784 true scaffold_4: 33267802-33272585 Setaria italica
Seita.4G215100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 33272086-33272585 Setaria italica
Seita.4G215100 1.0kb upstream 1.0kb upstream 5284 true scaffold_4: 33266802-33272085 Setaria italica
Seita.4G215100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 33266802-33267801 Setaria italica
Seita.4G215100 1.0kb downstream 1.0kb downstream 5284 true scaffold_4: 33267802-33273085 Setaria italica
Seita.4G215100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 33272086-33273085 Setaria italica
Seita.4G215100 2.0kb upstream 2.0kb upstream 6284 true scaffold_4: 33265802-33272085 Setaria italica
Seita.4G215100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 33265802-33267801 Setaria italica
Seita.4G215100 2.0kb downstream 2.0kb downstream 6284 true scaffold_4: 33267802-33274085 Setaria italica
Seita.4G215100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 33272086-33274085 Setaria italica
Seita.4G215100 5.0kb upstream 5.0kb upstream 9284 true scaffold_4: 33262802-33272085 Setaria italica
Seita.4G215100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 33262802-33267801 Setaria italica
Seita.4G215100 5.0kb downstream 5.0kb downstream 9284 true scaffold_4: 33267802-33277085 Setaria italica
Seita.4G215100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 33272086-33277085 Setaria italica
Seita.4G215100 10.0kb upstream 10.0kb upstream 14284 true scaffold_4: 33257802-33272085 Setaria italica
Seita.4G215100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 33257802-33267801 Setaria italica
Seita.4G215100 10.0kb downstream 10.0kb downstream 14284 true scaffold_4: 33267802-33282085 Setaria italica
Seita.4G215100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 33272086-33282085 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992428 5273 Angiosperm View MSA
122181323 5267 Panicoideae View MSA
124568594 5269 Grass View MSA
121262786 5274 Embryophyte View MSA
123427852 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.212        
cufflinks 3.925        
cufflinks 0.967       Low
cufflinks 0.669       Low
cufflinks 1.368        
cufflinks 4.368        
cufflinks 1.831        
cufflinks 5.452        
cufflinks 4.104        
cufflinks 5.366        
cufflinks 4.506        
cufflinks 7.737       High
cufflinks 4.013        
cufflinks 1.874        
cufflinks 4.623        
cufflinks 1.242       Low
cufflinks 9.164       High
cufflinks 1.463        
cufflinks 1.049       Low
cufflinks 7.313       High

0 Strain