Gene : Seita.4G218100 S. italica v2.2
Defline:  (1 of 1) PTHR34550:SF1 - 30S RIBOSOMAL PROTEIN S31, CHLOROPLASTIC Genomic Order:  2181
Name:  ? Seita.4G218100 Secondary Identifier:  ? PAC:32708760
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G218100 0.5kb upstream 0.5kb upstream 3790 true scaffold_4: 33803665-33807454 Setaria italica
Seita.4G218100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 33806955-33807454 Setaria italica
Seita.4G218100 0.5kb downstream 0.5kb downstream 3790 true scaffold_4: 33803165-33806954 Setaria italica
Seita.4G218100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 33803165-33803664 Setaria italica
Seita.4G218100 1.0kb upstream 1.0kb upstream 4290 true scaffold_4: 33803665-33807954 Setaria italica
Seita.4G218100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 33806955-33807954 Setaria italica
Seita.4G218100 1.0kb downstream 1.0kb downstream 4290 true scaffold_4: 33802665-33806954 Setaria italica
Seita.4G218100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 33802665-33803664 Setaria italica
Seita.4G218100 2.0kb upstream 2.0kb upstream 5290 true scaffold_4: 33803665-33808954 Setaria italica
Seita.4G218100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 33806955-33808954 Setaria italica
Seita.4G218100 2.0kb downstream 2.0kb downstream 5290 true scaffold_4: 33801665-33806954 Setaria italica
Seita.4G218100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 33801665-33803664 Setaria italica
Seita.4G218100 5.0kb upstream 5.0kb upstream 8290 true scaffold_4: 33803665-33811954 Setaria italica
Seita.4G218100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 33806955-33811954 Setaria italica
Seita.4G218100 5.0kb downstream 5.0kb downstream 8290 true scaffold_4: 33798665-33806954 Setaria italica
Seita.4G218100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 33798665-33803664 Setaria italica
Seita.4G218100 10.0kb upstream 10.0kb upstream 13290 true scaffold_4: 33803665-33816954 Setaria italica
Seita.4G218100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 33806955-33816954 Setaria italica
Seita.4G218100 10.0kb downstream 10.0kb downstream 13290 true scaffold_4: 33793665-33806954 Setaria italica
Seita.4G218100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 33793665-33803664 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191469 5267 Panicoideae View MSA
124574896 5269 Grass View MSA
122046754 5273 Angiosperm View MSA
121345882 5274 Embryophyte View MSA
123380282 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.484        
cufflinks 3.475        
cufflinks 2.638        
cufflinks 2.319        
cufflinks 11.063     High High
cufflinks 3.8        
cufflinks 10.471       High
cufflinks 21.358     High High
cufflinks 25.75     High High
cufflinks 7.526        
cufflinks 2.491        
cufflinks 0.296       Low
cufflinks 0.62       Low
cufflinks 6.742        
cufflinks 0.493       Low
cufflinks 4.836        
cufflinks 0.502       Low
cufflinks 1.067        
cufflinks 2.051        
cufflinks 0.562       Low

0 Strain