Gene : Seita.4G219200 S. italica v2.2
Defline:  (1 of 1) PTHR31636:SF2 - SCARECROW-LIKE PROTEIN 18 Genomic Order:  2192
Name:  ? Seita.4G219200 Secondary Identifier:  ? PAC:32708633
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G219200 0.5kb upstream 0.5kb upstream 2402 true scaffold_4: 33892966-33895367 Setaria italica
Seita.4G219200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 33894868-33895367 Setaria italica
Seita.4G219200 0.5kb downstream 0.5kb downstream 2402 true scaffold_4: 33892466-33894867 Setaria italica
Seita.4G219200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 33892466-33892965 Setaria italica
Seita.4G219200 1.0kb upstream 1.0kb upstream 2902 true scaffold_4: 33892966-33895867 Setaria italica
Seita.4G219200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 33894868-33895867 Setaria italica
Seita.4G219200 1.0kb downstream 1.0kb downstream 2902 true scaffold_4: 33891966-33894867 Setaria italica
Seita.4G219200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 33891966-33892965 Setaria italica
Seita.4G219200 2.0kb upstream 2.0kb upstream 3902 true scaffold_4: 33892966-33896867 Setaria italica
Seita.4G219200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 33894868-33896867 Setaria italica
Seita.4G219200 2.0kb downstream 2.0kb downstream 3902 true scaffold_4: 33890966-33894867 Setaria italica
Seita.4G219200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 33890966-33892965 Setaria italica
Seita.4G219200 5.0kb upstream 5.0kb upstream 6902 true scaffold_4: 33892966-33899867 Setaria italica
Seita.4G219200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 33894868-33899867 Setaria italica
Seita.4G219200 5.0kb downstream 5.0kb downstream 6902 true scaffold_4: 33887966-33894867 Setaria italica
Seita.4G219200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 33887966-33892965 Setaria italica
Seita.4G219200 10.0kb upstream 10.0kb upstream 11902 true scaffold_4: 33892966-33904867 Setaria italica
Seita.4G219200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 33894868-33904867 Setaria italica
Seita.4G219200 10.0kb downstream 10.0kb downstream 11902 true scaffold_4: 33882966-33894867 Setaria italica
Seita.4G219200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 33882966-33892965 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189874 5267 Panicoideae View MSA
124585376 5269 Grass View MSA
122041925 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.402        
cufflinks 0.24        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.236        
cufflinks 0.135        
cufflinks 0.095     Low  
cufflinks 0.167        
cufflinks 1.404       High
cufflinks 0.317        
cufflinks 0.399        
cufflinks 0.561        
cufflinks 0.016     Low Low
cufflinks 0.891       High
cufflinks 0.097     Low  
cufflinks 0.588        
cufflinks 0.085     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.529        

0 Strain