Gene : Seita.4G216900 S. italica v2.2
Defline:  (1 of 170) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  2169
Name:  ? Seita.4G216900 Secondary Identifier:  ? PAC:32709691
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G216900 0.5kb upstream 0.5kb upstream 5430 true scaffold_4: 33521193-33526622 Setaria italica
Seita.4G216900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 33521193-33521692 Setaria italica
Seita.4G216900 0.5kb downstream 0.5kb downstream 5430 true scaffold_4: 33521693-33527122 Setaria italica
Seita.4G216900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 33526623-33527122 Setaria italica
Seita.4G216900 1.0kb upstream 1.0kb upstream 5930 true scaffold_4: 33520693-33526622 Setaria italica
Seita.4G216900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 33520693-33521692 Setaria italica
Seita.4G216900 1.0kb downstream 1.0kb downstream 5930 true scaffold_4: 33521693-33527622 Setaria italica
Seita.4G216900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 33526623-33527622 Setaria italica
Seita.4G216900 2.0kb upstream 2.0kb upstream 6930 true scaffold_4: 33519693-33526622 Setaria italica
Seita.4G216900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 33519693-33521692 Setaria italica
Seita.4G216900 2.0kb downstream 2.0kb downstream 6930 true scaffold_4: 33521693-33528622 Setaria italica
Seita.4G216900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 33526623-33528622 Setaria italica
Seita.4G216900 5.0kb upstream 5.0kb upstream 9930 true scaffold_4: 33516693-33526622 Setaria italica
Seita.4G216900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 33516693-33521692 Setaria italica
Seita.4G216900 5.0kb downstream 5.0kb downstream 9930 true scaffold_4: 33521693-33531622 Setaria italica
Seita.4G216900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 33526623-33531622 Setaria italica
Seita.4G216900 10.0kb upstream 10.0kb upstream 14930 true scaffold_4: 33511693-33526622 Setaria italica
Seita.4G216900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 33511693-33521692 Setaria italica
Seita.4G216900 10.0kb downstream 10.0kb downstream 14930 true scaffold_4: 33521693-33536622 Setaria italica
Seita.4G216900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 33526623-33536622 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122190136 5267 Panicoideae View MSA
124575154 5269 Grass View MSA
122042457 5273 Angiosperm View MSA
121344277 5274 Embryophyte View MSA
123380015 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.975        
cufflinks 3.59        
cufflinks 4.604        
cufflinks 4.032        
cufflinks 5.962        
cufflinks 5.674        
cufflinks 15.565     High High
cufflinks 5.748        
cufflinks 8.398        
cufflinks 1.111        
cufflinks 3.138        
cufflinks 0.095     Low Low
cufflinks 0.866        
cufflinks 1.9        
cufflinks 0.125       Low
cufflinks 30.157     High High
cufflinks 0.156       Low
cufflinks 6.062        
cufflinks 15.463     High High
cufflinks 0.204       Low

0 Strain