Gene : Seita.4G223600 S. italica v2.2
Defline:  (1 of 14) KOG0752 - Mitochondrial solute carrier protein Genomic Order:  2236
Name:  ? Seita.4G223600 Secondary Identifier:  ? PAC:32709252
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G223600 0.5kb upstream 0.5kb upstream 3632 true scaffold_4: 34400361-34403992 Setaria italica
Seita.4G223600 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 34400361-34400860 Setaria italica
Seita.4G223600 0.5kb downstream 0.5kb downstream 3632 true scaffold_4: 34400861-34404492 Setaria italica
Seita.4G223600 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 34403993-34404492 Setaria italica
Seita.4G223600 1.0kb upstream 1.0kb upstream 4132 true scaffold_4: 34399861-34403992 Setaria italica
Seita.4G223600 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 34399861-34400860 Setaria italica
Seita.4G223600 1.0kb downstream 1.0kb downstream 4132 true scaffold_4: 34400861-34404992 Setaria italica
Seita.4G223600 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 34403993-34404992 Setaria italica
Seita.4G223600 2.0kb upstream 2.0kb upstream 5132 true scaffold_4: 34398861-34403992 Setaria italica
Seita.4G223600 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 34398861-34400860 Setaria italica
Seita.4G223600 2.0kb downstream 2.0kb downstream 5132 true scaffold_4: 34400861-34405992 Setaria italica
Seita.4G223600 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 34403993-34405992 Setaria italica
Seita.4G223600 5.0kb upstream 5.0kb upstream 8132 true scaffold_4: 34395861-34403992 Setaria italica
Seita.4G223600 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 34395861-34400860 Setaria italica
Seita.4G223600 5.0kb downstream 5.0kb downstream 8132 true scaffold_4: 34400861-34408992 Setaria italica
Seita.4G223600 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 34403993-34408992 Setaria italica
Seita.4G223600 10.0kb upstream 10.0kb upstream 13132 true scaffold_4: 34390861-34403992 Setaria italica
Seita.4G223600 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 34390861-34400860 Setaria italica
Seita.4G223600 10.0kb downstream 10.0kb downstream 13132 true scaffold_4: 34400861-34413992 Setaria italica
Seita.4G223600 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 34403993-34413992 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185890 5267 Panicoideae View MSA
124578141 5269 Grass View MSA
122044807 5273 Angiosperm View MSA
123429077 5275 Viridiplantae View MSA
121350048 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.073     High  
cufflinks 12.577        
cufflinks 8.844       Low
cufflinks 9.376       Low
cufflinks 14.421     High  
cufflinks 17.113     High  
cufflinks 14.008     High  
cufflinks 14.315     High  
cufflinks 22.348     High High
cufflinks 6.959       Low
cufflinks 12.378        
cufflinks 13.808     High  
cufflinks 13.61     High  
cufflinks 9.668       Low
cufflinks 14.329     High  
cufflinks 16.998     High  
cufflinks 16.143     High  
cufflinks 14.47     High  
cufflinks 10.187        
cufflinks 15.403     High  

0 Strain