Gene : Seita.5G007500 S. italica v2.2
Defline:  (1 of 3) PTHR19139//PTHR19139:SF165 - AQUAPORIN TRANSPORTER Genomic Order:  75
Name:  ? Seita.5G007500 Secondary Identifier:  ? PAC:32681405
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G007500 0.5kb upstream 0.5kb upstream 1795 true scaffold_5: 526125-527919 Setaria italica
Seita.5G007500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 527420-527919 Setaria italica
Seita.5G007500 0.5kb downstream 0.5kb downstream 1795 true scaffold_5: 525625-527419 Setaria italica
Seita.5G007500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 525625-526124 Setaria italica
Seita.5G007500 1.0kb upstream 1.0kb upstream 2295 true scaffold_5: 526125-528419 Setaria italica
Seita.5G007500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 527420-528419 Setaria italica
Seita.5G007500 1.0kb downstream 1.0kb downstream 2295 true scaffold_5: 525125-527419 Setaria italica
Seita.5G007500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 525125-526124 Setaria italica
Seita.5G007500 2.0kb upstream 2.0kb upstream 3295 true scaffold_5: 526125-529419 Setaria italica
Seita.5G007500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 527420-529419 Setaria italica
Seita.5G007500 2.0kb downstream 2.0kb downstream 3295 true scaffold_5: 524125-527419 Setaria italica
Seita.5G007500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 524125-526124 Setaria italica
Seita.5G007500 5.0kb upstream 5.0kb upstream 6295 true scaffold_5: 526125-532419 Setaria italica
Seita.5G007500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 527420-532419 Setaria italica
Seita.5G007500 5.0kb downstream 5.0kb downstream 6295 true scaffold_5: 521125-527419 Setaria italica
Seita.5G007500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 521125-526124 Setaria italica
Seita.5G007500 10.0kb upstream 10.0kb upstream 11295 true scaffold_5: 526125-537419 Setaria italica
Seita.5G007500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 527420-537419 Setaria italica
Seita.5G007500 10.0kb downstream 10.0kb downstream 11295 true scaffold_5: 516125-527419 Setaria italica
Seita.5G007500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 516125-526124 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177165 5267 Panicoideae View MSA
124570670 5269 Grass View MSA
122045364 5273 Angiosperm View MSA
121310441 5274 Embryophyte View MSA
123427856 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.463        
cufflinks 17.587     High High
cufflinks 0.043     Low Low
cufflinks 0.037     Low Low
cufflinks 0.116        
cufflinks 29.731     High High
cufflinks 1.221        
cufflinks 2.988       High
cufflinks 0.315        
cufflinks 0.834        
cufflinks 0.262        
cufflinks 0.051     Low Low
cufflinks 0.416        
cufflinks 0.094     Low  
cufflinks 0.064     Low  
cufflinks 0.3        
cufflinks 0.203        
cufflinks 0.126        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.118     Low  

0 Strain