Gene : Seita.5G014100 S. italica v2.2
Defline:  (1 of 1) PTHR23249:SF16 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 1 Genomic Order:  141
Name:  ? Seita.5G014100 Secondary Identifier:  ? PAC:32683991
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G014100 0.5kb upstream 0.5kb upstream 6005 true scaffold_5: 1781870-1787874 Setaria italica
Seita.5G014100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 1787375-1787874 Setaria italica
Seita.5G014100 0.5kb downstream 0.5kb downstream 6005 true scaffold_5: 1781370-1787374 Setaria italica
Seita.5G014100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 1781370-1781869 Setaria italica
Seita.5G014100 1.0kb upstream 1.0kb upstream 6505 true scaffold_5: 1781870-1788374 Setaria italica
Seita.5G014100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 1787375-1788374 Setaria italica
Seita.5G014100 1.0kb downstream 1.0kb downstream 6505 true scaffold_5: 1780870-1787374 Setaria italica
Seita.5G014100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 1780870-1781869 Setaria italica
Seita.5G014100 2.0kb upstream 2.0kb upstream 7505 true scaffold_5: 1781870-1789374 Setaria italica
Seita.5G014100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 1787375-1789374 Setaria italica
Seita.5G014100 2.0kb downstream 2.0kb downstream 7505 true scaffold_5: 1779870-1787374 Setaria italica
Seita.5G014100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 1779870-1781869 Setaria italica
Seita.5G014100 5.0kb upstream 5.0kb upstream 10505 true scaffold_5: 1781870-1792374 Setaria italica
Seita.5G014100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 1787375-1792374 Setaria italica
Seita.5G014100 5.0kb downstream 5.0kb downstream 10505 true scaffold_5: 1776870-1787374 Setaria italica
Seita.5G014100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 1776870-1781869 Setaria italica
Seita.5G014100 10.0kb upstream 10.0kb upstream 15505 true scaffold_5: 1781870-1797374 Setaria italica
Seita.5G014100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 1787375-1797374 Setaria italica
Seita.5G014100 10.0kb downstream 10.0kb downstream 15505 true scaffold_5: 1771870-1787374 Setaria italica
Seita.5G014100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 1771870-1781869 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026490 5273 Angiosperm View MSA
122194738 5267 Panicoideae View MSA
124578248 5269 Grass View MSA
121344291 5274 Embryophyte View MSA
123427363 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.053        
cufflinks 4.871        
cufflinks 5.252        
cufflinks 5.329        
cufflinks 3.849       Low
cufflinks 5.301        
cufflinks 4.011        
cufflinks 5.921        
cufflinks 2.804       Low
cufflinks 10.198       High
cufflinks 5.071        
cufflinks 5.487        
cufflinks 5.677        
cufflinks 4.805        
cufflinks 7.177       High
cufflinks 3.988        
cufflinks 7.453       High
cufflinks 4.307        
cufflinks 5.083        
cufflinks 6.483        

0 Strain