Gene : Seita.5G017400 S. italica v2.2
Defline:  (1 of 1) PF03417 - Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase (AAT) Genomic Order:  174
Name:  ? Seita.5G017400 Secondary Identifier:  ? PAC:32682224
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G017400 0.5kb upstream 0.5kb upstream 2792 true scaffold_5: 2022865-2025656 Setaria italica
Seita.5G017400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2022865-2023364 Setaria italica
Seita.5G017400 0.5kb downstream 0.5kb downstream 2792 true scaffold_5: 2023365-2026156 Setaria italica
Seita.5G017400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2025657-2026156 Setaria italica
Seita.5G017400 1.0kb upstream 1.0kb upstream 3292 true scaffold_5: 2022365-2025656 Setaria italica
Seita.5G017400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2022365-2023364 Setaria italica
Seita.5G017400 1.0kb downstream 1.0kb downstream 3292 true scaffold_5: 2023365-2026656 Setaria italica
Seita.5G017400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2025657-2026656 Setaria italica
Seita.5G017400 2.0kb upstream 2.0kb upstream 4292 true scaffold_5: 2021365-2025656 Setaria italica
Seita.5G017400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2021365-2023364 Setaria italica
Seita.5G017400 2.0kb downstream 2.0kb downstream 4292 true scaffold_5: 2023365-2027656 Setaria italica
Seita.5G017400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2025657-2027656 Setaria italica
Seita.5G017400 5.0kb upstream 5.0kb upstream 7292 true scaffold_5: 2018365-2025656 Setaria italica
Seita.5G017400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2018365-2023364 Setaria italica
Seita.5G017400 5.0kb downstream 5.0kb downstream 7292 true scaffold_5: 2023365-2030656 Setaria italica
Seita.5G017400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2025657-2030656 Setaria italica
Seita.5G017400 10.0kb upstream 10.0kb upstream 12292 true scaffold_5: 2013365-2025656 Setaria italica
Seita.5G017400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2013365-2023364 Setaria italica
Seita.5G017400 10.0kb downstream 10.0kb downstream 12292 true scaffold_5: 2023365-2035656 Setaria italica
Seita.5G017400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2025657-2035656 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193327 5267 Panicoideae View MSA
124585252 5269 Grass View MSA
122048477 5273 Angiosperm View MSA
121348469 5274 Embryophyte View MSA
123380874 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.112        
cufflinks 2.991        
cufflinks 7.79        
cufflinks 7.863        
cufflinks 7.954        
cufflinks 3.494        
cufflinks 6.846        
cufflinks 9.181        
cufflinks 10.619        
cufflinks 2.941        
cufflinks 1.718        
cufflinks 0.129     Low Low
cufflinks 0.48        
cufflinks 7.218        
cufflinks 0.128       Low
cufflinks 6.317        
cufflinks 0.209       Low
cufflinks 2.829        
cufflinks 4.664        
cufflinks 0.097     Low Low

0 Strain