Gene : Seita.5G017300 S. italica v2.2
Genomic Order:  173 Name:  ? Seita.5G017300
Secondary Identifier:  ? PAC:32684259
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G017300 0.5kb upstream 0.5kb upstream 5433 true scaffold_5: 1997812-2003244 Setaria italica
Seita.5G017300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 1997812-1998311 Setaria italica
Seita.5G017300 0.5kb downstream 0.5kb downstream 5433 true scaffold_5: 1998312-2003744 Setaria italica
Seita.5G017300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2003245-2003744 Setaria italica
Seita.5G017300 1.0kb upstream 1.0kb upstream 5933 true scaffold_5: 1997312-2003244 Setaria italica
Seita.5G017300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 1997312-1998311 Setaria italica
Seita.5G017300 1.0kb downstream 1.0kb downstream 5933 true scaffold_5: 1998312-2004244 Setaria italica
Seita.5G017300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2003245-2004244 Setaria italica
Seita.5G017300 2.0kb upstream 2.0kb upstream 6933 true scaffold_5: 1996312-2003244 Setaria italica
Seita.5G017300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 1996312-1998311 Setaria italica
Seita.5G017300 2.0kb downstream 2.0kb downstream 6933 true scaffold_5: 1998312-2005244 Setaria italica
Seita.5G017300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2003245-2005244 Setaria italica
Seita.5G017300 5.0kb upstream 5.0kb upstream 9933 true scaffold_5: 1993312-2003244 Setaria italica
Seita.5G017300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 1993312-1998311 Setaria italica
Seita.5G017300 5.0kb downstream 5.0kb downstream 9933 true scaffold_5: 1998312-2008244 Setaria italica
Seita.5G017300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2003245-2008244 Setaria italica
Seita.5G017300 10.0kb upstream 10.0kb upstream 14933 true scaffold_5: 1988312-2003244 Setaria italica
Seita.5G017300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 1988312-1998311 Setaria italica
Seita.5G017300 10.0kb downstream 10.0kb downstream 14933 true scaffold_5: 1998312-2013244 Setaria italica
Seita.5G017300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2003245-2013244 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189129 5267 Panicoideae View MSA
124581704 5269 Grass View MSA
122042830 5273 Angiosperm View MSA
121310031 5274 Embryophyte View MSA
123347634 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.636        
cufflinks 2.207       High
cufflinks 0.491       Low
cufflinks 0.341       Low
cufflinks 0.299       Low
cufflinks 1.924       High
cufflinks 1.441        
cufflinks 1.067        
cufflinks 0.959        
cufflinks 1.137        
cufflinks 1.983       High
cufflinks 0.952        
cufflinks 0.706        
cufflinks 0.539        
cufflinks 1.379        
cufflinks 1.007        
cufflinks 1.183        
cufflinks 0.868        
cufflinks 0.426       Low
cufflinks 1.428        

0 Strain