Gene : Seita.5G015300 S. italica v2.2
Defline:  (1 of 1) PF15375 - Domain of unknown function (DUF4602) (DUF4602) Genomic Order:  153
Name:  ? Seita.5G015300 Secondary Identifier:  ? PAC:32682001
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G015300 0.5kb upstream 0.5kb upstream 2536 true scaffold_5: 1882789-1885324 Setaria italica
Seita.5G015300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 1882789-1883288 Setaria italica
Seita.5G015300 0.5kb downstream 0.5kb downstream 2536 true scaffold_5: 1883289-1885824 Setaria italica
Seita.5G015300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 1885325-1885824 Setaria italica
Seita.5G015300 1.0kb upstream 1.0kb upstream 3036 true scaffold_5: 1882289-1885324 Setaria italica
Seita.5G015300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 1882289-1883288 Setaria italica
Seita.5G015300 1.0kb downstream 1.0kb downstream 3036 true scaffold_5: 1883289-1886324 Setaria italica
Seita.5G015300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 1885325-1886324 Setaria italica
Seita.5G015300 2.0kb upstream 2.0kb upstream 4036 true scaffold_5: 1881289-1885324 Setaria italica
Seita.5G015300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 1881289-1883288 Setaria italica
Seita.5G015300 2.0kb downstream 2.0kb downstream 4036 true scaffold_5: 1883289-1887324 Setaria italica
Seita.5G015300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 1885325-1887324 Setaria italica
Seita.5G015300 5.0kb upstream 5.0kb upstream 7036 true scaffold_5: 1878289-1885324 Setaria italica
Seita.5G015300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 1878289-1883288 Setaria italica
Seita.5G015300 5.0kb downstream 5.0kb downstream 7036 true scaffold_5: 1883289-1890324 Setaria italica
Seita.5G015300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 1885325-1890324 Setaria italica
Seita.5G015300 10.0kb upstream 10.0kb upstream 12036 true scaffold_5: 1873289-1885324 Setaria italica
Seita.5G015300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 1873289-1883288 Setaria italica
Seita.5G015300 10.0kb downstream 10.0kb downstream 12036 true scaffold_5: 1883289-1895324 Setaria italica
Seita.5G015300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 1885325-1895324 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189844 5267 Panicoideae View MSA
124583554 5269 Grass View MSA
122045698 5273 Angiosperm View MSA
121344425 5274 Embryophyte View MSA
123427686 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.536        
cufflinks 9.879       High
cufflinks 6.124        
cufflinks 5.253        
cufflinks 5.923        
cufflinks 12.019       High
cufflinks 5.622        
cufflinks 9.011        
cufflinks 8.055        
cufflinks 5.874        
cufflinks 5.883        
cufflinks 7.687        
cufflinks 4.056       Low
cufflinks 9.649       High
cufflinks 7.628        
cufflinks 3.587       Low
cufflinks 10.59       High
cufflinks 3.056       Low
cufflinks 5.932        
cufflinks 8.072        

0 Strain