Gene : Seita.5G021800 S. italica v2.2
Defline:  (1 of 1) 2.3.1.168 - Dihydrolipoyllysine-residue (2-methylpropanoyl)transferase / Dihydrolipoyl transacylase Genomic Order:  218
Name:  ? Seita.5G021800 Secondary Identifier:  ? PAC:32686235
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-5046 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G021800 0.5kb upstream 0.5kb upstream 5323 true scaffold_5: 2255628-2260950 Setaria italica
Seita.5G021800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2255628-2256127 Setaria italica
Seita.5G021800 0.5kb downstream 0.5kb downstream 5323 true scaffold_5: 2256128-2261450 Setaria italica
Seita.5G021800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2260951-2261450 Setaria italica
Seita.5G021800 1.0kb upstream 1.0kb upstream 5823 true scaffold_5: 2255128-2260950 Setaria italica
Seita.5G021800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2255128-2256127 Setaria italica
Seita.5G021800 1.0kb downstream 1.0kb downstream 5823 true scaffold_5: 2256128-2261950 Setaria italica
Seita.5G021800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2260951-2261950 Setaria italica
Seita.5G021800 2.0kb upstream 2.0kb upstream 6823 true scaffold_5: 2254128-2260950 Setaria italica
Seita.5G021800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2254128-2256127 Setaria italica
Seita.5G021800 2.0kb downstream 2.0kb downstream 6823 true scaffold_5: 2256128-2262950 Setaria italica
Seita.5G021800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2260951-2262950 Setaria italica
Seita.5G021800 5.0kb upstream 5.0kb upstream 9823 true scaffold_5: 2251128-2260950 Setaria italica
Seita.5G021800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2251128-2256127 Setaria italica
Seita.5G021800 5.0kb downstream 5.0kb downstream 9823 true scaffold_5: 2256128-2265950 Setaria italica
Seita.5G021800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2260951-2265950 Setaria italica
Seita.5G021800 10.0kb upstream 10.0kb upstream 14823 true scaffold_5: 2246128-2260950 Setaria italica
Seita.5G021800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2246128-2256127 Setaria italica
Seita.5G021800 10.0kb downstream 10.0kb downstream 14823 true scaffold_5: 2256128-2270950 Setaria italica
Seita.5G021800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2260951-2270950 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176539 5267 Panicoideae View MSA
124572328 5269 Grass View MSA
122046167 5273 Angiosperm View MSA
121344663 5274 Embryophyte View MSA
123425518 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.323     High  
cufflinks 7.305       Low
cufflinks 46.839     High High
cufflinks 54.841     High High
cufflinks 37.679     High  
cufflinks 7.838       Low
cufflinks 6.693       Low
cufflinks 29.859     High  
cufflinks 23.562     High  
cufflinks 15.689     High  
cufflinks 26.876     High  
cufflinks 30.77     High  
cufflinks 28.284     High  
cufflinks 32.372     High  
cufflinks 7.621       Low
cufflinks 10.568        
cufflinks 14.359     High  
cufflinks 67.124     High High
cufflinks 36.461     High  
cufflinks 5.084       Low

0 Strain