Gene : Seita.5G021600 S. italica v2.2
Defline:  (1 of 1) PTHR10791:SF29 - BIDIRECTIONAL SUGAR TRANSPORTER SWEET16-RELATED Genomic Order:  216
Name:  ? Seita.5G021600 Secondary Identifier:  ? PAC:32683522
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G021600 0.5kb upstream 0.5kb upstream 5328 true scaffold_5: 2236557-2241884 Setaria italica
Seita.5G021600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2241385-2241884 Setaria italica
Seita.5G021600 0.5kb downstream 0.5kb downstream 5328 true scaffold_5: 2236057-2241384 Setaria italica
Seita.5G021600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2236057-2236556 Setaria italica
Seita.5G021600 1.0kb upstream 1.0kb upstream 5828 true scaffold_5: 2236557-2242384 Setaria italica
Seita.5G021600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2241385-2242384 Setaria italica
Seita.5G021600 1.0kb downstream 1.0kb downstream 5828 true scaffold_5: 2235557-2241384 Setaria italica
Seita.5G021600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2235557-2236556 Setaria italica
Seita.5G021600 2.0kb upstream 2.0kb upstream 6828 true scaffold_5: 2236557-2243384 Setaria italica
Seita.5G021600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2241385-2243384 Setaria italica
Seita.5G021600 2.0kb downstream 2.0kb downstream 6828 true scaffold_5: 2234557-2241384 Setaria italica
Seita.5G021600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2234557-2236556 Setaria italica
Seita.5G021600 5.0kb upstream 5.0kb upstream 9828 true scaffold_5: 2236557-2246384 Setaria italica
Seita.5G021600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2241385-2246384 Setaria italica
Seita.5G021600 5.0kb downstream 5.0kb downstream 9828 true scaffold_5: 2231557-2241384 Setaria italica
Seita.5G021600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2231557-2236556 Setaria italica
Seita.5G021600 10.0kb upstream 10.0kb upstream 14828 true scaffold_5: 2236557-2251384 Setaria italica
Seita.5G021600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2241385-2251384 Setaria italica
Seita.5G021600 10.0kb downstream 10.0kb downstream 14828 true scaffold_5: 2226557-2241384 Setaria italica
Seita.5G021600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2226557-2236556 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177567 5267 Panicoideae View MSA
124583216 5269 Grass View MSA
122043077 5273 Angiosperm View MSA
121350795 5274 Embryophyte View MSA
123428840 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.377     High  
cufflinks 10.055        
cufflinks 3.211       Low
cufflinks 1.651       Low
cufflinks 7.988        
cufflinks 8.319        
cufflinks 13.994     High  
cufflinks 19.376     High  
cufflinks 20.081     High  
cufflinks 1.453       Low
cufflinks 38.957     High High
cufflinks 28.142     High  
cufflinks 87.638     High High
cufflinks 12.749        
cufflinks 17.992     High  
cufflinks 4.477        
cufflinks 20.431     High  
cufflinks 2.086       Low
cufflinks 2.478       Low
cufflinks 40.126     High High

0 Strain