Gene : Seita.5G025500 S. italica v2.2
Defline:  (1 of 2) PTHR10643 - KINETOCHORE PROTEIN NDC80 Genomic Order:  255
Name:  ? Seita.5G025500 Secondary Identifier:  ? PAC:32685297
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G025500 0.5kb upstream 0.5kb upstream 5005 true scaffold_5: 2546428-2551432 Setaria italica
Seita.5G025500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2546428-2546927 Setaria italica
Seita.5G025500 0.5kb downstream 0.5kb downstream 5005 true scaffold_5: 2546928-2551932 Setaria italica
Seita.5G025500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2551433-2551932 Setaria italica
Seita.5G025500 1.0kb upstream 1.0kb upstream 5505 true scaffold_5: 2545928-2551432 Setaria italica
Seita.5G025500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2545928-2546927 Setaria italica
Seita.5G025500 1.0kb downstream 1.0kb downstream 5505 true scaffold_5: 2546928-2552432 Setaria italica
Seita.5G025500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2551433-2552432 Setaria italica
Seita.5G025500 2.0kb upstream 2.0kb upstream 6505 true scaffold_5: 2544928-2551432 Setaria italica
Seita.5G025500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2544928-2546927 Setaria italica
Seita.5G025500 2.0kb downstream 2.0kb downstream 6505 true scaffold_5: 2546928-2553432 Setaria italica
Seita.5G025500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2551433-2553432 Setaria italica
Seita.5G025500 5.0kb upstream 5.0kb upstream 9505 true scaffold_5: 2541928-2551432 Setaria italica
Seita.5G025500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2541928-2546927 Setaria italica
Seita.5G025500 5.0kb downstream 5.0kb downstream 9505 true scaffold_5: 2546928-2556432 Setaria italica
Seita.5G025500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2551433-2556432 Setaria italica
Seita.5G025500 10.0kb upstream 10.0kb upstream 14505 true scaffold_5: 2536928-2551432 Setaria italica
Seita.5G025500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2536928-2546927 Setaria italica
Seita.5G025500 10.0kb downstream 10.0kb downstream 14505 true scaffold_5: 2546928-2561432 Setaria italica
Seita.5G025500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2551433-2561432 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193738 5267 Panicoideae View MSA
124584363 5269 Grass View MSA
122049067 5273 Angiosperm View MSA
121344778 5274 Embryophyte View MSA
123428580 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.492        
cufflinks 4.151        
cufflinks 2.567        
cufflinks 1.185       Low
cufflinks 1.192       Low
cufflinks 4.207        
cufflinks 2.626        
cufflinks 5.798       High
cufflinks 3.097        
cufflinks 3.842        
cufflinks 4.969        
cufflinks 5.205       High
cufflinks 2.157        
cufflinks 3.693        
cufflinks 3.756        
cufflinks 1.844        
cufflinks 5.671       High
cufflinks 2.091        
cufflinks 1.33       Low
cufflinks 5.267       High

0 Strain