Gene : Seita.5G027500 S. italica v2.2
Defline:  (1 of 1) PTHR23303 - CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING Genomic Order:  275
Name:  ? Seita.5G027500 Secondary Identifier:  ? PAC:32685864
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G027500 0.5kb upstream 0.5kb upstream 12127 true scaffold_5: 2689984-2702110 Setaria italica
Seita.5G027500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2689984-2690483 Setaria italica
Seita.5G027500 0.5kb downstream 0.5kb downstream 12127 true scaffold_5: 2690484-2702610 Setaria italica
Seita.5G027500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2702111-2702610 Setaria italica
Seita.5G027500 1.0kb upstream 1.0kb upstream 12627 true scaffold_5: 2689484-2702110 Setaria italica
Seita.5G027500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2689484-2690483 Setaria italica
Seita.5G027500 1.0kb downstream 1.0kb downstream 12627 true scaffold_5: 2690484-2703110 Setaria italica
Seita.5G027500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2702111-2703110 Setaria italica
Seita.5G027500 2.0kb upstream 2.0kb upstream 13627 true scaffold_5: 2688484-2702110 Setaria italica
Seita.5G027500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2688484-2690483 Setaria italica
Seita.5G027500 2.0kb downstream 2.0kb downstream 13627 true scaffold_5: 2690484-2704110 Setaria italica
Seita.5G027500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2702111-2704110 Setaria italica
Seita.5G027500 5.0kb upstream 5.0kb upstream 16627 true scaffold_5: 2685484-2702110 Setaria italica
Seita.5G027500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2685484-2690483 Setaria italica
Seita.5G027500 5.0kb downstream 5.0kb downstream 16627 true scaffold_5: 2690484-2707110 Setaria italica
Seita.5G027500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2702111-2707110 Setaria italica
Seita.5G027500 10.0kb upstream 10.0kb upstream 21627 true scaffold_5: 2680484-2702110 Setaria italica
Seita.5G027500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2680484-2690483 Setaria italica
Seita.5G027500 10.0kb downstream 10.0kb downstream 21627 true scaffold_5: 2690484-2712110 Setaria italica
Seita.5G027500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2702111-2712110 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179570 5267 Panicoideae View MSA
124568652 5269 Grass View MSA
122048074 5273 Angiosperm View MSA
121346415 5274 Embryophyte View MSA
123380379 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.981     High High
cufflinks 27.445     High High
cufflinks 11.012     High  
cufflinks 8.06       Low
cufflinks 8.03       Low
cufflinks 23.775     High  
cufflinks 17.341     High  
cufflinks 15.534     High  
cufflinks 14.651     High  
cufflinks 18.522     High  
cufflinks 27.123     High High
cufflinks 17.743     High  
cufflinks 16.524     High  
cufflinks 11.841        
cufflinks 27.969     High High
cufflinks 14.286     High  
cufflinks 21.954     High  
cufflinks 14.136     High  
cufflinks 9.149       Low
cufflinks 26.42     High High

0 Strain