Gene : Seita.5G028100 S. italica v2.2
Defline:  (1 of 2) PTHR10643 - KINETOCHORE PROTEIN NDC80 Genomic Order:  281
Name:  ? Seita.5G028100 Secondary Identifier:  ? PAC:32685578
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G028100 0.5kb upstream 0.5kb upstream 5667 true scaffold_5: 2730969-2736635 Setaria italica
Seita.5G028100 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2736136-2736635 Setaria italica
Seita.5G028100 0.5kb downstream 0.5kb downstream 5667 true scaffold_5: 2730469-2736135 Setaria italica
Seita.5G028100 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2730469-2730968 Setaria italica
Seita.5G028100 1.0kb upstream 1.0kb upstream 6167 true scaffold_5: 2730969-2737135 Setaria italica
Seita.5G028100 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2736136-2737135 Setaria italica
Seita.5G028100 1.0kb downstream 1.0kb downstream 6167 true scaffold_5: 2729969-2736135 Setaria italica
Seita.5G028100 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2729969-2730968 Setaria italica
Seita.5G028100 2.0kb upstream 2.0kb upstream 7167 true scaffold_5: 2730969-2738135 Setaria italica
Seita.5G028100 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2736136-2738135 Setaria italica
Seita.5G028100 2.0kb downstream 2.0kb downstream 7167 true scaffold_5: 2728969-2736135 Setaria italica
Seita.5G028100 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2728969-2730968 Setaria italica
Seita.5G028100 5.0kb upstream 5.0kb upstream 10167 true scaffold_5: 2730969-2741135 Setaria italica
Seita.5G028100 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2736136-2741135 Setaria italica
Seita.5G028100 5.0kb downstream 5.0kb downstream 10167 true scaffold_5: 2725969-2736135 Setaria italica
Seita.5G028100 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2725969-2730968 Setaria italica
Seita.5G028100 10.0kb upstream 10.0kb upstream 15167 true scaffold_5: 2730969-2746135 Setaria italica
Seita.5G028100 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2736136-2746135 Setaria italica
Seita.5G028100 10.0kb downstream 10.0kb downstream 15167 true scaffold_5: 2720969-2736135 Setaria italica
Seita.5G028100 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2720969-2730968 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193738 5267 Panicoideae View MSA
124584363 5269 Grass View MSA
122049067 5273 Angiosperm View MSA
121344778 5274 Embryophyte View MSA
123428580 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.637       High
cufflinks 2.347       High
cufflinks 0.776        
cufflinks 0.423       Low
cufflinks 0.359       Low
cufflinks 2.263        
cufflinks 0.94        
cufflinks 1.356        
cufflinks 0.788        
cufflinks 2.087        
cufflinks 2.203        
cufflinks 1.737        
cufflinks 1.139        
cufflinks 0.942        
cufflinks 1.288        
cufflinks 1.165        
cufflinks 2.264        
cufflinks 2.159        
cufflinks 0.406       Low
cufflinks 1.539        

0 Strain