Gene : Seita.5G026400 S. italica v2.2
Genomic Order:  264 Name:  ? Seita.5G026400
Secondary Identifier:  ? PAC:32680706
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G026400 0.5kb upstream 0.5kb upstream 2073 true scaffold_5: 2587296-2589368 Setaria italica
Seita.5G026400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 2587296-2587795 Setaria italica
Seita.5G026400 0.5kb downstream 0.5kb downstream 2073 true scaffold_5: 2587796-2589868 Setaria italica
Seita.5G026400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 2589369-2589868 Setaria italica
Seita.5G026400 1.0kb upstream 1.0kb upstream 2573 true scaffold_5: 2586796-2589368 Setaria italica
Seita.5G026400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 2586796-2587795 Setaria italica
Seita.5G026400 1.0kb downstream 1.0kb downstream 2573 true scaffold_5: 2587796-2590368 Setaria italica
Seita.5G026400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 2589369-2590368 Setaria italica
Seita.5G026400 2.0kb upstream 2.0kb upstream 3573 true scaffold_5: 2585796-2589368 Setaria italica
Seita.5G026400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 2585796-2587795 Setaria italica
Seita.5G026400 2.0kb downstream 2.0kb downstream 3573 true scaffold_5: 2587796-2591368 Setaria italica
Seita.5G026400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 2589369-2591368 Setaria italica
Seita.5G026400 5.0kb upstream 5.0kb upstream 6573 true scaffold_5: 2582796-2589368 Setaria italica
Seita.5G026400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 2582796-2587795 Setaria italica
Seita.5G026400 5.0kb downstream 5.0kb downstream 6573 true scaffold_5: 2587796-2594368 Setaria italica
Seita.5G026400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 2589369-2594368 Setaria italica
Seita.5G026400 10.0kb upstream 10.0kb upstream 11573 true scaffold_5: 2577796-2589368 Setaria italica
Seita.5G026400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 2577796-2587795 Setaria italica
Seita.5G026400 10.0kb downstream 10.0kb downstream 11573 true scaffold_5: 2587796-2599368 Setaria italica
Seita.5G026400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 2589369-2599368 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122117331 5267 Panicoideae View MSA
124411505 5269 Grass View MSA
122050795 5273 Angiosperm View MSA
121312130 5274 Embryophyte View MSA
123349331 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.293       High
cufflinks 2.289       Low
cufflinks 4.493        
cufflinks 5.205        
cufflinks 2.623       Low
cufflinks 2.565       Low
cufflinks 2.576       Low
cufflinks 6.305       High
cufflinks 3.375        
cufflinks 7.697       High
cufflinks 3.172        
cufflinks 7.021       High
cufflinks 3.97        
cufflinks 2.712       Low
cufflinks 4.344        
cufflinks 4.915        
cufflinks 6.765       High
cufflinks 6.455       High
cufflinks 3.468        
cufflinks 5.067        

0 Strain