Gene : Seita.5G036800 S. italica v2.2
Defline:  (1 of 4) PF02672 - CP12 domain (CP12) Genomic Order:  368
Name:  ? Seita.5G036800 Secondary Identifier:  ? PAC:32683062
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G036800 0.5kb upstream 0.5kb upstream 1745 true scaffold_5: 3430955-3432699 Setaria italica
Seita.5G036800 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 3432200-3432699 Setaria italica
Seita.5G036800 0.5kb downstream 0.5kb downstream 1745 true scaffold_5: 3430455-3432199 Setaria italica
Seita.5G036800 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 3430455-3430954 Setaria italica
Seita.5G036800 1.0kb upstream 1.0kb upstream 2245 true scaffold_5: 3430955-3433199 Setaria italica
Seita.5G036800 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 3432200-3433199 Setaria italica
Seita.5G036800 1.0kb downstream 1.0kb downstream 2245 true scaffold_5: 3429955-3432199 Setaria italica
Seita.5G036800 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 3429955-3430954 Setaria italica
Seita.5G036800 2.0kb upstream 2.0kb upstream 3245 true scaffold_5: 3430955-3434199 Setaria italica
Seita.5G036800 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 3432200-3434199 Setaria italica
Seita.5G036800 2.0kb downstream 2.0kb downstream 3245 true scaffold_5: 3428955-3432199 Setaria italica
Seita.5G036800 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 3428955-3430954 Setaria italica
Seita.5G036800 5.0kb upstream 5.0kb upstream 6245 true scaffold_5: 3430955-3437199 Setaria italica
Seita.5G036800 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 3432200-3437199 Setaria italica
Seita.5G036800 5.0kb downstream 5.0kb downstream 6245 true scaffold_5: 3425955-3432199 Setaria italica
Seita.5G036800 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 3425955-3430954 Setaria italica
Seita.5G036800 10.0kb upstream 10.0kb upstream 11245 true scaffold_5: 3430955-3442199 Setaria italica
Seita.5G036800 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 3432200-3442199 Setaria italica
Seita.5G036800 10.0kb downstream 10.0kb downstream 11245 true scaffold_5: 3420955-3432199 Setaria italica
Seita.5G036800 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 3420955-3430954 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194589 5267 Panicoideae View MSA
124570852 5269 Grass View MSA
122046618 5273 Angiosperm View MSA
121351753 5274 Embryophyte View MSA
123424034 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.999        
cufflinks 35.255     High  
cufflinks 288.843     High High
cufflinks 265.233     High High
cufflinks 200.337     High  
cufflinks 33.155     High  
cufflinks 63.911     High  
cufflinks 363.359     High High
cufflinks 115.442     High  
cufflinks 0.975        
cufflinks 0.805        
cufflinks 0.081     Low Low
cufflinks 0.401       Low
cufflinks 553.286     High High
cufflinks 0.211       Low
cufflinks 49.987     High  
cufflinks 0.079     Low Low
cufflinks 2.383        
cufflinks 145.381     High  
cufflinks 0.124     Low Low

0 Strain