Gene : Seita.5G037000 S. italica v2.2
Genomic Order:  370 Name:  ? Seita.5G037000
Secondary Identifier:  ? PAC:32683225
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G037000 0.5kb upstream 0.5kb upstream 7554 true scaffold_5: 3438590-3446143 Setaria italica
Seita.5G037000 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 3438590-3439089 Setaria italica
Seita.5G037000 0.5kb downstream 0.5kb downstream 7554 true scaffold_5: 3439090-3446643 Setaria italica
Seita.5G037000 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 3446144-3446643 Setaria italica
Seita.5G037000 1.0kb upstream 1.0kb upstream 8054 true scaffold_5: 3438090-3446143 Setaria italica
Seita.5G037000 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 3438090-3439089 Setaria italica
Seita.5G037000 1.0kb downstream 1.0kb downstream 8054 true scaffold_5: 3439090-3447143 Setaria italica
Seita.5G037000 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 3446144-3447143 Setaria italica
Seita.5G037000 2.0kb upstream 2.0kb upstream 9054 true scaffold_5: 3437090-3446143 Setaria italica
Seita.5G037000 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 3437090-3439089 Setaria italica
Seita.5G037000 2.0kb downstream 2.0kb downstream 9054 true scaffold_5: 3439090-3448143 Setaria italica
Seita.5G037000 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 3446144-3448143 Setaria italica
Seita.5G037000 5.0kb upstream 5.0kb upstream 12054 true scaffold_5: 3434090-3446143 Setaria italica
Seita.5G037000 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 3434090-3439089 Setaria italica
Seita.5G037000 5.0kb downstream 5.0kb downstream 12054 true scaffold_5: 3439090-3451143 Setaria italica
Seita.5G037000 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 3446144-3451143 Setaria italica
Seita.5G037000 10.0kb upstream 10.0kb upstream 17054 true scaffold_5: 3429090-3446143 Setaria italica
Seita.5G037000 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 3429090-3439089 Setaria italica
Seita.5G037000 10.0kb downstream 10.0kb downstream 17054 true scaffold_5: 3439090-3456143 Setaria italica
Seita.5G037000 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 3446144-3456143 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183561 5267 Panicoideae View MSA
124570478 5269 Grass View MSA
122047134 5273 Angiosperm View MSA
121347972 5274 Embryophyte View MSA
123380696 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.043        
cufflinks 1.809       High
cufflinks 0.444        
cufflinks 0.266       Low
cufflinks 0.229       Low
cufflinks 1.468       High
cufflinks 0.801        
cufflinks 0.87        
cufflinks 0.498        
cufflinks 0.548        
cufflinks 1.136        
cufflinks 0.732        
cufflinks 0.585        
cufflinks 0.805        
cufflinks 1.058        
cufflinks 0.494        
cufflinks 0.952        
cufflinks 0.257       Low
cufflinks 0.215       Low
cufflinks 1.028        

0 Strain