Gene : Seita.5G043300 S. italica v2.2
Defline:  (1 of 2) PTHR22891//PTHR22891:SF56 - EUKARYOTIC TRANSLATION INITIATION FACTOR 2C Genomic Order:  433
Name:  ? Seita.5G043300 Secondary Identifier:  ? PAC:32682334
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G043300 0.5kb upstream 0.5kb upstream 8299 true scaffold_5: 3870561-3878859 Setaria italica
Seita.5G043300 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 3870561-3871060 Setaria italica
Seita.5G043300 0.5kb downstream 0.5kb downstream 8299 true scaffold_5: 3871061-3879359 Setaria italica
Seita.5G043300 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 3878860-3879359 Setaria italica
Seita.5G043300 1.0kb upstream 1.0kb upstream 8799 true scaffold_5: 3870061-3878859 Setaria italica
Seita.5G043300 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 3870061-3871060 Setaria italica
Seita.5G043300 1.0kb downstream 1.0kb downstream 8799 true scaffold_5: 3871061-3879859 Setaria italica
Seita.5G043300 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 3878860-3879859 Setaria italica
Seita.5G043300 2.0kb upstream 2.0kb upstream 9799 true scaffold_5: 3869061-3878859 Setaria italica
Seita.5G043300 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 3869061-3871060 Setaria italica
Seita.5G043300 2.0kb downstream 2.0kb downstream 9799 true scaffold_5: 3871061-3880859 Setaria italica
Seita.5G043300 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 3878860-3880859 Setaria italica
Seita.5G043300 5.0kb upstream 5.0kb upstream 12799 true scaffold_5: 3866061-3878859 Setaria italica
Seita.5G043300 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 3866061-3871060 Setaria italica
Seita.5G043300 5.0kb downstream 5.0kb downstream 12799 true scaffold_5: 3871061-3883859 Setaria italica
Seita.5G043300 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 3878860-3883859 Setaria italica
Seita.5G043300 10.0kb upstream 10.0kb upstream 17799 true scaffold_5: 3861061-3878859 Setaria italica
Seita.5G043300 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 3861061-3871060 Setaria italica
Seita.5G043300 10.0kb downstream 10.0kb downstream 17799 true scaffold_5: 3871061-3888859 Setaria italica
Seita.5G043300 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 3878860-3888859 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194989 5267 Panicoideae View MSA
124580010 5269 Grass View MSA
122050518 5273 Angiosperm View MSA
121349761 5274 Embryophyte View MSA
123381432 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.6     High  
cufflinks 55.241     High High
cufflinks 2.839       Low
cufflinks 2.295       Low
cufflinks 4.931        
cufflinks 54.91     High High
cufflinks 14.541     High  
cufflinks 9.693        
cufflinks 13.552     High  
cufflinks 4.58        
cufflinks 11.31        
cufflinks 8.036        
cufflinks 10.133        
cufflinks 2.382       Low
cufflinks 14.428     High  
cufflinks 12.78     High  
cufflinks 11.371        
cufflinks 7.888        
cufflinks 1.609       Low
cufflinks 11.137        

0 Strain