Gene : Seita.4G262400 S. italica v2.2
Defline:  (1 of 1) PTHR12357:SF3 - FI21232P1 Genomic Order:  2624
Name:  ? Seita.4G262400 Secondary Identifier:  ? PAC:32706231
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G262400 0.5kb upstream 0.5kb upstream 7709 true scaffold_4: 38065672-38073380 Setaria italica
Seita.4G262400 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 38072881-38073380 Setaria italica
Seita.4G262400 0.5kb downstream 0.5kb downstream 7709 true scaffold_4: 38065172-38072880 Setaria italica
Seita.4G262400 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 38065172-38065671 Setaria italica
Seita.4G262400 1.0kb upstream 1.0kb upstream 8209 true scaffold_4: 38065672-38073880 Setaria italica
Seita.4G262400 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 38072881-38073880 Setaria italica
Seita.4G262400 1.0kb downstream 1.0kb downstream 8209 true scaffold_4: 38064672-38072880 Setaria italica
Seita.4G262400 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 38064672-38065671 Setaria italica
Seita.4G262400 2.0kb upstream 2.0kb upstream 9209 true scaffold_4: 38065672-38074880 Setaria italica
Seita.4G262400 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 38072881-38074880 Setaria italica
Seita.4G262400 2.0kb downstream 2.0kb downstream 9209 true scaffold_4: 38063672-38072880 Setaria italica
Seita.4G262400 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 38063672-38065671 Setaria italica
Seita.4G262400 5.0kb upstream 5.0kb upstream 12209 true scaffold_4: 38065672-38077880 Setaria italica
Seita.4G262400 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 38072881-38077880 Setaria italica
Seita.4G262400 5.0kb downstream 5.0kb downstream 12209 true scaffold_4: 38060672-38072880 Setaria italica
Seita.4G262400 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 38060672-38065671 Setaria italica
Seita.4G262400 10.0kb upstream 10.0kb upstream 17209 true scaffold_4: 38065672-38082880 Setaria italica
Seita.4G262400 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 38072881-38082880 Setaria italica
Seita.4G262400 10.0kb downstream 10.0kb downstream 17209 true scaffold_4: 38055672-38072880 Setaria italica
Seita.4G262400 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 38055672-38065671 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179667 5267 Panicoideae View MSA
124580661 5269 Grass View MSA
122044898 5273 Angiosperm View MSA
121345406 5274 Embryophyte View MSA
123426118 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.652        
cufflinks 4.489       High
cufflinks 2.423       Low
cufflinks 2.322       Low
cufflinks 2.016       Low
cufflinks 4.485       High
cufflinks 2.874        
cufflinks 3.192        
cufflinks 2.616        
cufflinks 3.271        
cufflinks 2.936        
cufflinks 3.052        
cufflinks 2.639        
cufflinks 3.108        
cufflinks 3.411        
cufflinks 3.3        
cufflinks 3.489        
cufflinks 3.824       High
cufflinks 2.443       Low
cufflinks 3.456        

0 Strain