Gene : Seita.4G262700 S. italica v2.2
Defline:  (1 of 1) PF02826//PF14833 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain (2-Hacid_dh_C) // NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase (NAD_binding_11) Genomic Order:  2627
Name:  ? Seita.4G262700 Secondary Identifier:  ? PAC:32708831
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica VALDEG-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G262700 0.5kb upstream 0.5kb upstream 4575 true scaffold_4: 38084913-38089487 Setaria italica
Seita.4G262700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 38088988-38089487 Setaria italica
Seita.4G262700 0.5kb downstream 0.5kb downstream 4575 true scaffold_4: 38084413-38088987 Setaria italica
Seita.4G262700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 38084413-38084912 Setaria italica
Seita.4G262700 1.0kb upstream 1.0kb upstream 5075 true scaffold_4: 38084913-38089987 Setaria italica
Seita.4G262700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 38088988-38089987 Setaria italica
Seita.4G262700 1.0kb downstream 1.0kb downstream 5075 true scaffold_4: 38083913-38088987 Setaria italica
Seita.4G262700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 38083913-38084912 Setaria italica
Seita.4G262700 2.0kb upstream 2.0kb upstream 6075 true scaffold_4: 38084913-38090987 Setaria italica
Seita.4G262700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 38088988-38090987 Setaria italica
Seita.4G262700 2.0kb downstream 2.0kb downstream 6075 true scaffold_4: 38082913-38088987 Setaria italica
Seita.4G262700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 38082913-38084912 Setaria italica
Seita.4G262700 5.0kb upstream 5.0kb upstream 9075 true scaffold_4: 38084913-38093987 Setaria italica
Seita.4G262700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 38088988-38093987 Setaria italica
Seita.4G262700 5.0kb downstream 5.0kb downstream 9075 true scaffold_4: 38079913-38088987 Setaria italica
Seita.4G262700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 38079913-38084912 Setaria italica
Seita.4G262700 10.0kb upstream 10.0kb upstream 14075 true scaffold_4: 38084913-38098987 Setaria italica
Seita.4G262700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 38088988-38098987 Setaria italica
Seita.4G262700 10.0kb downstream 10.0kb downstream 14075 true scaffold_4: 38074913-38088987 Setaria italica
Seita.4G262700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 38074913-38084912 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176709 5267 Panicoideae View MSA
124570878 5269 Grass View MSA
122045971 5273 Angiosperm View MSA
121347535 5274 Embryophyte View MSA
123424560 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.841     High High
cufflinks 7.505        
cufflinks 4.334       Low
cufflinks 4.824       Low
cufflinks 4.545       Low
cufflinks 7.856        
cufflinks 6.094        
cufflinks 7.439        
cufflinks 6.377        
cufflinks 9.984        
cufflinks 13.321        
cufflinks 18.268     High High
cufflinks 16.946     High High
cufflinks 5.259       Low
cufflinks 9.218        
cufflinks 9.436        
cufflinks 10.832        
cufflinks 28.237     High High
cufflinks 7.391        
cufflinks 8.185        

0 Strain