Gene : Seita.4G263300 S. italica v2.2
Defline:  (1 of 1) PTHR22762//PTHR22762:SF83 - ALPHA-GLUCOSIDASE Genomic Order:  2633
Name:  ? Seita.4G263300 Secondary Identifier:  ? PAC:32709113
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G263300 0.5kb upstream 0.5kb upstream 5295 true scaffold_4: 38150740-38156034 Setaria italica
Seita.4G263300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 38150740-38151239 Setaria italica
Seita.4G263300 0.5kb downstream 0.5kb downstream 5295 true scaffold_4: 38151240-38156534 Setaria italica
Seita.4G263300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 38156035-38156534 Setaria italica
Seita.4G263300 1.0kb upstream 1.0kb upstream 5795 true scaffold_4: 38150240-38156034 Setaria italica
Seita.4G263300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 38150240-38151239 Setaria italica
Seita.4G263300 1.0kb downstream 1.0kb downstream 5795 true scaffold_4: 38151240-38157034 Setaria italica
Seita.4G263300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 38156035-38157034 Setaria italica
Seita.4G263300 2.0kb upstream 2.0kb upstream 6795 true scaffold_4: 38149240-38156034 Setaria italica
Seita.4G263300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 38149240-38151239 Setaria italica
Seita.4G263300 2.0kb downstream 2.0kb downstream 6795 true scaffold_4: 38151240-38158034 Setaria italica
Seita.4G263300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 38156035-38158034 Setaria italica
Seita.4G263300 5.0kb upstream 5.0kb upstream 9795 true scaffold_4: 38146240-38156034 Setaria italica
Seita.4G263300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 38146240-38151239 Setaria italica
Seita.4G263300 5.0kb downstream 5.0kb downstream 9795 true scaffold_4: 38151240-38161034 Setaria italica
Seita.4G263300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 38156035-38161034 Setaria italica
Seita.4G263300 10.0kb upstream 10.0kb upstream 14795 true scaffold_4: 38141240-38156034 Setaria italica
Seita.4G263300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 38141240-38151239 Setaria italica
Seita.4G263300 10.0kb downstream 10.0kb downstream 14795 true scaffold_4: 38151240-38166034 Setaria italica
Seita.4G263300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 38156035-38166034 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191084 5267 Panicoideae View MSA
124571117 5269 Grass View MSA
122047200 5273 Angiosperm View MSA
121351039 5274 Embryophyte View MSA
123427739 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.926        
cufflinks 1.179       Low
cufflinks 2.311        
cufflinks 2.562        
cufflinks 3.189        
cufflinks 1.565        
cufflinks 3.341        
cufflinks 1.511        
cufflinks 2.275        
cufflinks 2.642        
cufflinks 5.309       High
cufflinks 1.03       Low
cufflinks 3.663       High
cufflinks 4.12       High
cufflinks 1.472       Low
cufflinks 1.736        
cufflinks 1.955        
cufflinks 2.58        
cufflinks 1.965        
cufflinks 2.192        

0 Strain