Gene : Seita.4G268100 S. italica v2.2
Defline:  (1 of 1) PTHR23089:SF3 - HISTIDINE TRIAD NUCLEOTIDE-BINDING PROTEIN 1 Genomic Order:  2681
Name:  ? Seita.4G268100 Secondary Identifier:  ? PAC:32706436
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G268100 0.5kb upstream 0.5kb upstream 2787 true scaffold_4: 38547206-38549992 Setaria italica
Seita.4G268100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 38549493-38549992 Setaria italica
Seita.4G268100 0.5kb downstream 0.5kb downstream 2787 true scaffold_4: 38546706-38549492 Setaria italica
Seita.4G268100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 38546706-38547205 Setaria italica
Seita.4G268100 1.0kb upstream 1.0kb upstream 3287 true scaffold_4: 38547206-38550492 Setaria italica
Seita.4G268100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 38549493-38550492 Setaria italica
Seita.4G268100 1.0kb downstream 1.0kb downstream 3287 true scaffold_4: 38546206-38549492 Setaria italica
Seita.4G268100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 38546206-38547205 Setaria italica
Seita.4G268100 2.0kb upstream 2.0kb upstream 4287 true scaffold_4: 38547206-38551492 Setaria italica
Seita.4G268100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 38549493-38551492 Setaria italica
Seita.4G268100 2.0kb downstream 2.0kb downstream 4287 true scaffold_4: 38545206-38549492 Setaria italica
Seita.4G268100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 38545206-38547205 Setaria italica
Seita.4G268100 5.0kb upstream 5.0kb upstream 7287 true scaffold_4: 38547206-38554492 Setaria italica
Seita.4G268100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 38549493-38554492 Setaria italica
Seita.4G268100 5.0kb downstream 5.0kb downstream 7287 true scaffold_4: 38542206-38549492 Setaria italica
Seita.4G268100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 38542206-38547205 Setaria italica
Seita.4G268100 10.0kb upstream 10.0kb upstream 12287 true scaffold_4: 38547206-38559492 Setaria italica
Seita.4G268100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 38549493-38559492 Setaria italica
Seita.4G268100 10.0kb downstream 10.0kb downstream 12287 true scaffold_4: 38537206-38549492 Setaria italica
Seita.4G268100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 38537206-38547205 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197072 5267 Panicoideae View MSA
124583814 5269 Grass View MSA
122042822 5273 Angiosperm View MSA
121347396 5274 Embryophyte View MSA
123425482 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.478        
cufflinks 8.348        
cufflinks 4.831        
cufflinks 4.229        
cufflinks 6.903        
cufflinks 8.18        
cufflinks 10.734       High
cufflinks 15.935     High High
cufflinks 15.509     High High
cufflinks 12.017       High
cufflinks 5.869        
cufflinks 3.048       Low
cufflinks 5.024        
cufflinks 6.004        
cufflinks 4.36        
cufflinks 6.574        
cufflinks 4.241        
cufflinks 2.844       Low
cufflinks 6.561        
cufflinks 4.157        

0 Strain