Gene : Seita.4G266700 S. italica v2.2
Defline:  (1 of 1) PTHR12419//PTHR12419:SF6 - OTU DOMAIN CONTAINING PROTEIN Genomic Order:  2667
Name:  ? Seita.4G266700 Secondary Identifier:  ? PAC:32706627
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G266700 0.5kb upstream 0.5kb upstream 4679 true scaffold_4: 38454530-38459208 Setaria italica
Seita.4G266700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 38458709-38459208 Setaria italica
Seita.4G266700 0.5kb downstream 0.5kb downstream 4679 true scaffold_4: 38454030-38458708 Setaria italica
Seita.4G266700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 38454030-38454529 Setaria italica
Seita.4G266700 1.0kb upstream 1.0kb upstream 5179 true scaffold_4: 38454530-38459708 Setaria italica
Seita.4G266700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 38458709-38459708 Setaria italica
Seita.4G266700 1.0kb downstream 1.0kb downstream 5179 true scaffold_4: 38453530-38458708 Setaria italica
Seita.4G266700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 38453530-38454529 Setaria italica
Seita.4G266700 2.0kb upstream 2.0kb upstream 6179 true scaffold_4: 38454530-38460708 Setaria italica
Seita.4G266700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 38458709-38460708 Setaria italica
Seita.4G266700 2.0kb downstream 2.0kb downstream 6179 true scaffold_4: 38452530-38458708 Setaria italica
Seita.4G266700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 38452530-38454529 Setaria italica
Seita.4G266700 5.0kb upstream 5.0kb upstream 9179 true scaffold_4: 38454530-38463708 Setaria italica
Seita.4G266700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 38458709-38463708 Setaria italica
Seita.4G266700 5.0kb downstream 5.0kb downstream 9179 true scaffold_4: 38449530-38458708 Setaria italica
Seita.4G266700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 38449530-38454529 Setaria italica
Seita.4G266700 10.0kb upstream 10.0kb upstream 14179 true scaffold_4: 38454530-38468708 Setaria italica
Seita.4G266700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 38458709-38468708 Setaria italica
Seita.4G266700 10.0kb downstream 10.0kb downstream 14179 true scaffold_4: 38444530-38458708 Setaria italica
Seita.4G266700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 38444530-38454529 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192326 5267 Panicoideae View MSA
124586821 5269 Grass View MSA
122048999 5273 Angiosperm View MSA
121348332 5274 Embryophyte View MSA
123428461 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.403        
cufflinks 1.969        
cufflinks 1.225        
cufflinks 0.831       Low
cufflinks 0.634       Low
cufflinks 2.038        
cufflinks 1.161        
cufflinks 1.069        
cufflinks 0.348       Low
cufflinks 2.21        
cufflinks 1.354        
cufflinks 3.719       High
cufflinks 2.777        
cufflinks 1.551        
cufflinks 3.088       High
cufflinks 1.175        
cufflinks 3.369       High
cufflinks 1.319        
cufflinks 1.005        
cufflinks 2.834       High

0 Strain