Gene : Seita.4G270000 S. italica v2.2
Defline:  (1 of 1) 2.4.1.101 - Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase / 1,2-N-acetylglucosaminyltransferase Genomic Order:  2700
Name:  ? Seita.4G270000 Secondary Identifier:  ? PAC:32709085
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7426 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G270000 0.5kb upstream 0.5kb upstream 5401 true scaffold_4: 38700044-38705444 Setaria italica
Seita.4G270000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 38704945-38705444 Setaria italica
Seita.4G270000 0.5kb downstream 0.5kb downstream 5401 true scaffold_4: 38699544-38704944 Setaria italica
Seita.4G270000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 38699544-38700043 Setaria italica
Seita.4G270000 1.0kb upstream 1.0kb upstream 5901 true scaffold_4: 38700044-38705944 Setaria italica
Seita.4G270000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 38704945-38705944 Setaria italica
Seita.4G270000 1.0kb downstream 1.0kb downstream 5901 true scaffold_4: 38699044-38704944 Setaria italica
Seita.4G270000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 38699044-38700043 Setaria italica
Seita.4G270000 2.0kb upstream 2.0kb upstream 6901 true scaffold_4: 38700044-38706944 Setaria italica
Seita.4G270000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 38704945-38706944 Setaria italica
Seita.4G270000 2.0kb downstream 2.0kb downstream 6901 true scaffold_4: 38698044-38704944 Setaria italica
Seita.4G270000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 38698044-38700043 Setaria italica
Seita.4G270000 5.0kb upstream 5.0kb upstream 9901 true scaffold_4: 38700044-38709944 Setaria italica
Seita.4G270000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 38704945-38709944 Setaria italica
Seita.4G270000 5.0kb downstream 5.0kb downstream 9901 true scaffold_4: 38695044-38704944 Setaria italica
Seita.4G270000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 38695044-38700043 Setaria italica
Seita.4G270000 10.0kb upstream 10.0kb upstream 14901 true scaffold_4: 38700044-38714944 Setaria italica
Seita.4G270000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 38704945-38714944 Setaria italica
Seita.4G270000 10.0kb downstream 10.0kb downstream 14901 true scaffold_4: 38690044-38704944 Setaria italica
Seita.4G270000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 38690044-38700043 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193900 5267 Panicoideae View MSA
124574164 5269 Grass View MSA
122050416 5273 Angiosperm View MSA
121350019 5274 Embryophyte View MSA
123426685 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.301     High High
cufflinks 22.042     High High
cufflinks 17.653     High  
cufflinks 14.653     High  
cufflinks 11.46     High Low
cufflinks 22.681     High High
cufflinks 15.168     High  
cufflinks 19.196     High  
cufflinks 11.509       Low
cufflinks 12.152       Low
cufflinks 17.756     High  
cufflinks 16.62     High  
cufflinks 12.873       Low
cufflinks 13.013        
cufflinks 16.477     High  
cufflinks 19.05     High  
cufflinks 16.458     High  
cufflinks 18.958     High  
cufflinks 12.537     High Low
cufflinks 15.686     High  

0 Strain