Gene : Seita.4G271300 S. italica v2.2
Defline:  (1 of 2) PTHR10366//PTHR10366:SF343 - NAD DEPENDENT EPIMERASE/DEHYDRATASE Genomic Order:  2713
Name:  ? Seita.4G271300 Secondary Identifier:  ? PAC:32708286
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G271300 0.5kb upstream 0.5kb upstream 4998 true scaffold_4: 38798299-38803296 Setaria italica
Seita.4G271300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 38802797-38803296 Setaria italica
Seita.4G271300 0.5kb downstream 0.5kb downstream 4998 true scaffold_4: 38797799-38802796 Setaria italica
Seita.4G271300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 38797799-38798298 Setaria italica
Seita.4G271300 1.0kb upstream 1.0kb upstream 5498 true scaffold_4: 38798299-38803796 Setaria italica
Seita.4G271300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 38802797-38803796 Setaria italica
Seita.4G271300 1.0kb downstream 1.0kb downstream 5498 true scaffold_4: 38797299-38802796 Setaria italica
Seita.4G271300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 38797299-38798298 Setaria italica
Seita.4G271300 2.0kb upstream 2.0kb upstream 6498 true scaffold_4: 38798299-38804796 Setaria italica
Seita.4G271300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 38802797-38804796 Setaria italica
Seita.4G271300 2.0kb downstream 2.0kb downstream 6498 true scaffold_4: 38796299-38802796 Setaria italica
Seita.4G271300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 38796299-38798298 Setaria italica
Seita.4G271300 5.0kb upstream 5.0kb upstream 9498 true scaffold_4: 38798299-38807796 Setaria italica
Seita.4G271300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 38802797-38807796 Setaria italica
Seita.4G271300 5.0kb downstream 5.0kb downstream 9498 true scaffold_4: 38793299-38802796 Setaria italica
Seita.4G271300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 38793299-38798298 Setaria italica
Seita.4G271300 10.0kb upstream 10.0kb upstream 14498 true scaffold_4: 38798299-38812796 Setaria italica
Seita.4G271300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 38802797-38812796 Setaria italica
Seita.4G271300 10.0kb downstream 10.0kb downstream 14498 true scaffold_4: 38788299-38802796 Setaria italica
Seita.4G271300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 38788299-38798298 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189662 5267 Panicoideae View MSA
124578350 5269 Grass View MSA
122046159 5273 Angiosperm View MSA
121349944 5274 Embryophyte View MSA
123424676 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.176        
cufflinks 2.523        
cufflinks 7.467        
cufflinks 10.928     High  
cufflinks 16.446     High  
cufflinks 1.824        
cufflinks 19.773     High High
cufflinks 9.781        
cufflinks 8.143        
cufflinks 0.631       Low
cufflinks 1.097        
cufflinks 0.384       Low
cufflinks 0.771        
cufflinks 5.131        
cufflinks 0.281       Low
cufflinks 71.903     High High
cufflinks 0.592       Low
cufflinks 13.175     High  
cufflinks 37.845     High High
cufflinks 0.471       Low

0 Strain