Gene : Seita.4G271500 S. italica v2.2
Defline:  (1 of 1) PTHR10920:SF12 - TRNA (CYTIDINE(32)/GUANOSINE(34)-2'-O)-METHYLTRANSFERASE-RELATED Genomic Order:  2715
Name:  ? Seita.4G271500 Secondary Identifier:  ? PAC:32706310
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6829 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G271500 0.5kb upstream 0.5kb upstream 3298 true scaffold_4: 38814741-38818038 Setaria italica
Seita.4G271500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 38814741-38815240 Setaria italica
Seita.4G271500 0.5kb downstream 0.5kb downstream 3298 true scaffold_4: 38815241-38818538 Setaria italica
Seita.4G271500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 38818039-38818538 Setaria italica
Seita.4G271500 1.0kb upstream 1.0kb upstream 3798 true scaffold_4: 38814241-38818038 Setaria italica
Seita.4G271500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 38814241-38815240 Setaria italica
Seita.4G271500 1.0kb downstream 1.0kb downstream 3798 true scaffold_4: 38815241-38819038 Setaria italica
Seita.4G271500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 38818039-38819038 Setaria italica
Seita.4G271500 2.0kb upstream 2.0kb upstream 4798 true scaffold_4: 38813241-38818038 Setaria italica
Seita.4G271500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 38813241-38815240 Setaria italica
Seita.4G271500 2.0kb downstream 2.0kb downstream 4798 true scaffold_4: 38815241-38820038 Setaria italica
Seita.4G271500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 38818039-38820038 Setaria italica
Seita.4G271500 5.0kb upstream 5.0kb upstream 7798 true scaffold_4: 38810241-38818038 Setaria italica
Seita.4G271500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 38810241-38815240 Setaria italica
Seita.4G271500 5.0kb downstream 5.0kb downstream 7798 true scaffold_4: 38815241-38823038 Setaria italica
Seita.4G271500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 38818039-38823038 Setaria italica
Seita.4G271500 10.0kb upstream 10.0kb upstream 12798 true scaffold_4: 38805241-38818038 Setaria italica
Seita.4G271500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 38805241-38815240 Setaria italica
Seita.4G271500 10.0kb downstream 10.0kb downstream 12798 true scaffold_4: 38815241-38828038 Setaria italica
Seita.4G271500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 38818039-38828038 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122184350 5267 Panicoideae View MSA
124575975 5269 Grass View MSA
122044785 5273 Angiosperm View MSA
121347520 5274 Embryophyte View MSA
123424894 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.227        
cufflinks 3.617        
cufflinks 3.575        
cufflinks 2.028       Low
cufflinks 2.07       Low
cufflinks 3.857        
cufflinks 2.292       Low
cufflinks 3.362        
cufflinks 2.908        
cufflinks 3.624        
cufflinks 3.176        
cufflinks 3.185        
cufflinks 2.541        
cufflinks 5.703       High
cufflinks 3.644        
cufflinks 3.039        
cufflinks 4.899       High
cufflinks 4.366       High
cufflinks 2.986        
cufflinks 4.03        

0 Strain