Gene : Seita.4G277800 S. italica v2.2
Defline:  (1 of 1) 1.3.1.88 - tRNA-dihydrouridine(16/17) synthase (NAD(P)(+)) / tRNA-dihydrouridine synthase 1 Genomic Order:  2778
Name:  ? Seita.4G277800 Secondary Identifier:  ? PAC:32706903
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G277800 0.5kb upstream 0.5kb upstream 3207 true scaffold_4: 39377411-39380617 Setaria italica
Seita.4G277800 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39377411-39377910 Setaria italica
Seita.4G277800 0.5kb downstream 0.5kb downstream 3207 true scaffold_4: 39377911-39381117 Setaria italica
Seita.4G277800 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39380618-39381117 Setaria italica
Seita.4G277800 1.0kb upstream 1.0kb upstream 3707 true scaffold_4: 39376911-39380617 Setaria italica
Seita.4G277800 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39376911-39377910 Setaria italica
Seita.4G277800 1.0kb downstream 1.0kb downstream 3707 true scaffold_4: 39377911-39381617 Setaria italica
Seita.4G277800 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39380618-39381617 Setaria italica
Seita.4G277800 2.0kb upstream 2.0kb upstream 4707 true scaffold_4: 39375911-39380617 Setaria italica
Seita.4G277800 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39375911-39377910 Setaria italica
Seita.4G277800 2.0kb downstream 2.0kb downstream 4707 true scaffold_4: 39377911-39382617 Setaria italica
Seita.4G277800 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39380618-39382617 Setaria italica
Seita.4G277800 5.0kb upstream 5.0kb upstream 7707 true scaffold_4: 39372911-39380617 Setaria italica
Seita.4G277800 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39372911-39377910 Setaria italica
Seita.4G277800 5.0kb downstream 5.0kb downstream 7707 true scaffold_4: 39377911-39385617 Setaria italica
Seita.4G277800 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39380618-39385617 Setaria italica
Seita.4G277800 10.0kb upstream 10.0kb upstream 12707 true scaffold_4: 39367911-39380617 Setaria italica
Seita.4G277800 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39367911-39377910 Setaria italica
Seita.4G277800 10.0kb downstream 10.0kb downstream 12707 true scaffold_4: 39377911-39390617 Setaria italica
Seita.4G277800 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39380618-39390617 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189314 5267 Panicoideae View MSA
124580682 5269 Grass View MSA
122041890 5273 Angiosperm View MSA
121349502 5274 Embryophyte View MSA
123428585 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.631        
cufflinks 6.365        
cufflinks 7.286        
cufflinks 5.776        
cufflinks 7.164        
cufflinks 6.753        
cufflinks 6.307        
cufflinks 6.353        
cufflinks 8.682       High
cufflinks 5.213       Low
cufflinks 5.337       Low
cufflinks 6.55        
cufflinks 5.047       Low
cufflinks 9.429       High
cufflinks 6.464        
cufflinks 5.904        
cufflinks 6.371        
cufflinks 6.811        
cufflinks 6.509        
cufflinks 6.213        

0 Strain