Gene : Seita.4G279700 S. italica v2.2
Defline:  (1 of 3) 3.4.22.49 - Separase / Separin Genomic Order:  2797
Name:  ? Seita.4G279700 Secondary Identifier:  ? PAC:32709512
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G279700 0.5kb upstream 0.5kb upstream 2831 true scaffold_4: 39507879-39510709 Setaria italica
Seita.4G279700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39510210-39510709 Setaria italica
Seita.4G279700 0.5kb downstream 0.5kb downstream 2831 true scaffold_4: 39507379-39510209 Setaria italica
Seita.4G279700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39507379-39507878 Setaria italica
Seita.4G279700 1.0kb upstream 1.0kb upstream 3331 true scaffold_4: 39507879-39511209 Setaria italica
Seita.4G279700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39510210-39511209 Setaria italica
Seita.4G279700 1.0kb downstream 1.0kb downstream 3331 true scaffold_4: 39506879-39510209 Setaria italica
Seita.4G279700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39506879-39507878 Setaria italica
Seita.4G279700 2.0kb upstream 2.0kb upstream 4331 true scaffold_4: 39507879-39512209 Setaria italica
Seita.4G279700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39510210-39512209 Setaria italica
Seita.4G279700 2.0kb downstream 2.0kb downstream 4331 true scaffold_4: 39505879-39510209 Setaria italica
Seita.4G279700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39505879-39507878 Setaria italica
Seita.4G279700 5.0kb upstream 5.0kb upstream 7331 true scaffold_4: 39507879-39515209 Setaria italica
Seita.4G279700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39510210-39515209 Setaria italica
Seita.4G279700 5.0kb downstream 5.0kb downstream 7331 true scaffold_4: 39502879-39510209 Setaria italica
Seita.4G279700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39502879-39507878 Setaria italica
Seita.4G279700 10.0kb upstream 10.0kb upstream 12331 true scaffold_4: 39507879-39520209 Setaria italica
Seita.4G279700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39510210-39520209 Setaria italica
Seita.4G279700 10.0kb downstream 10.0kb downstream 12331 true scaffold_4: 39497879-39510209 Setaria italica
Seita.4G279700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39497879-39507878 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028973 5273 Angiosperm View MSA
122053827 5267 Panicoideae Singleton cluster - no MSA
124353682 5269 Grass Singleton cluster - no MSA
121298392 5274 Embryophyte View MSA
123336368 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.034     Low  
cufflinks 0.046     Low  
cufflinks 0.008     Low Low
cufflinks 0.045     Low  
cufflinks 0.007     Low Low
cufflinks 0.047     Low  
cufflinks 0.022     Low  
cufflinks 0.026     Low  
cufflinks 0.025     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.035     Low  
cufflinks 0.029     Low  
cufflinks 0.071     Low High
cufflinks 0.01     Low Low
cufflinks 0.053     Low  
cufflinks 0.009     Low Low
cufflinks 0.067     Low High
cufflinks 0.036     Low  
cufflinks 0.024     Low  
cufflinks 0.022     Low  

0 Strain