Gene : Seita.4G281500 S. italica v2.2
Defline:  (1 of 1) PTHR11528:SF45 - ENDOPLASMIN HOMOLOG Genomic Order:  2815
Name:  ? Seita.4G281500 Secondary Identifier:  ? PAC:32709152
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G281500 0.5kb upstream 0.5kb upstream 6669 true scaffold_4: 39628454-39635122 Setaria italica
Seita.4G281500 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39634623-39635122 Setaria italica
Seita.4G281500 0.5kb downstream 0.5kb downstream 6669 true scaffold_4: 39627954-39634622 Setaria italica
Seita.4G281500 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39627954-39628453 Setaria italica
Seita.4G281500 1.0kb upstream 1.0kb upstream 7169 true scaffold_4: 39628454-39635622 Setaria italica
Seita.4G281500 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39634623-39635622 Setaria italica
Seita.4G281500 1.0kb downstream 1.0kb downstream 7169 true scaffold_4: 39627454-39634622 Setaria italica
Seita.4G281500 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39627454-39628453 Setaria italica
Seita.4G281500 2.0kb upstream 2.0kb upstream 8169 true scaffold_4: 39628454-39636622 Setaria italica
Seita.4G281500 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39634623-39636622 Setaria italica
Seita.4G281500 2.0kb downstream 2.0kb downstream 8169 true scaffold_4: 39626454-39634622 Setaria italica
Seita.4G281500 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39626454-39628453 Setaria italica
Seita.4G281500 5.0kb upstream 5.0kb upstream 11169 true scaffold_4: 39628454-39639622 Setaria italica
Seita.4G281500 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39634623-39639622 Setaria italica
Seita.4G281500 5.0kb downstream 5.0kb downstream 11169 true scaffold_4: 39623454-39634622 Setaria italica
Seita.4G281500 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39623454-39628453 Setaria italica
Seita.4G281500 10.0kb upstream 10.0kb upstream 16169 true scaffold_4: 39628454-39644622 Setaria italica
Seita.4G281500 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39634623-39644622 Setaria italica
Seita.4G281500 10.0kb downstream 10.0kb downstream 16169 true scaffold_4: 39618454-39634622 Setaria italica
Seita.4G281500 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39618454-39628453 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122175962 5267 Panicoideae View MSA
124586413 5269 Grass View MSA
122042425 5273 Angiosperm View MSA
121346567 5274 Embryophyte View MSA
123424830 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 77.627     High  
cufflinks 83.521     High  
cufflinks 13.424     High Low
cufflinks 6.914       Low
cufflinks 10.028       Low
cufflinks 51.622     High  
cufflinks 81.168     High  
cufflinks 41.146     High  
cufflinks 29.892     High  
cufflinks 44.002     High  
cufflinks 72.915     High  
cufflinks 61.891     High  
cufflinks 45.653     High  
cufflinks 53.43     High  
cufflinks 91.503     High High
cufflinks 20.162     High  
cufflinks 62.084     High  
cufflinks 22.076     High  
cufflinks 84.938     High  
cufflinks 80.618     High  

0 Strain