Gene : Seita.4G282000 S. italica v2.2
Defline:  (1 of 1) PTHR11079:SF73 - RNA PSEUDOURIDINE SYNTHASE 2, CHLOROPLASTIC Genomic Order:  2820
Name:  ? Seita.4G282000 Secondary Identifier:  ? PAC:32707625
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G282000 0.5kb upstream 0.5kb upstream 4763 true scaffold_4: 39656228-39660990 Setaria italica
Seita.4G282000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39660491-39660990 Setaria italica
Seita.4G282000 0.5kb downstream 0.5kb downstream 4763 true scaffold_4: 39655728-39660490 Setaria italica
Seita.4G282000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39655728-39656227 Setaria italica
Seita.4G282000 1.0kb upstream 1.0kb upstream 5263 true scaffold_4: 39656228-39661490 Setaria italica
Seita.4G282000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39660491-39661490 Setaria italica
Seita.4G282000 1.0kb downstream 1.0kb downstream 5263 true scaffold_4: 39655228-39660490 Setaria italica
Seita.4G282000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39655228-39656227 Setaria italica
Seita.4G282000 2.0kb upstream 2.0kb upstream 6263 true scaffold_4: 39656228-39662490 Setaria italica
Seita.4G282000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39660491-39662490 Setaria italica
Seita.4G282000 2.0kb downstream 2.0kb downstream 6263 true scaffold_4: 39654228-39660490 Setaria italica
Seita.4G282000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39654228-39656227 Setaria italica
Seita.4G282000 5.0kb upstream 5.0kb upstream 9263 true scaffold_4: 39656228-39665490 Setaria italica
Seita.4G282000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39660491-39665490 Setaria italica
Seita.4G282000 5.0kb downstream 5.0kb downstream 9263 true scaffold_4: 39651228-39660490 Setaria italica
Seita.4G282000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39651228-39656227 Setaria italica
Seita.4G282000 10.0kb upstream 10.0kb upstream 14263 true scaffold_4: 39656228-39670490 Setaria italica
Seita.4G282000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39660491-39670490 Setaria italica
Seita.4G282000 10.0kb downstream 10.0kb downstream 14263 true scaffold_4: 39646228-39660490 Setaria italica
Seita.4G282000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39646228-39656227 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181937 5267 Panicoideae View MSA
124572394 5269 Grass View MSA
122047561 5273 Angiosperm View MSA
121344474 5274 Embryophyte View MSA
123426669 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.365        
cufflinks 1.353        
cufflinks 1.207        
cufflinks 1.061        
cufflinks 1.286        
cufflinks 1.324        
cufflinks 1.235        
cufflinks 1.484        
cufflinks 1.817       High
cufflinks 0.991        
cufflinks 0.99        
cufflinks 0.871       Low
cufflinks 0.958        
cufflinks 1.346        
cufflinks 0.835       Low
cufflinks 1.749       High
cufflinks 0.975        
cufflinks 1.87       High
cufflinks 0.828       Low
cufflinks 0.737       Low

0 Strain