Gene : Seita.4G280900 S. italica v2.2
Defline:  (1 of 1) PTHR15189:SF7 - BRCA1-A COMPLEX SUBUNIT BRE Genomic Order:  2809
Name:  ? Seita.4G280900 Secondary Identifier:  ? PAC:32707892
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G280900 0.5kb upstream 0.5kb upstream 6075 true scaffold_4: 39581082-39587156 Setaria italica
Seita.4G280900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39586657-39587156 Setaria italica
Seita.4G280900 0.5kb downstream 0.5kb downstream 6075 true scaffold_4: 39580582-39586656 Setaria italica
Seita.4G280900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39580582-39581081 Setaria italica
Seita.4G280900 1.0kb upstream 1.0kb upstream 6575 true scaffold_4: 39581082-39587656 Setaria italica
Seita.4G280900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39586657-39587656 Setaria italica
Seita.4G280900 1.0kb downstream 1.0kb downstream 6575 true scaffold_4: 39580082-39586656 Setaria italica
Seita.4G280900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39580082-39581081 Setaria italica
Seita.4G280900 2.0kb upstream 2.0kb upstream 7575 true scaffold_4: 39581082-39588656 Setaria italica
Seita.4G280900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39586657-39588656 Setaria italica
Seita.4G280900 2.0kb downstream 2.0kb downstream 7575 true scaffold_4: 39579082-39586656 Setaria italica
Seita.4G280900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39579082-39581081 Setaria italica
Seita.4G280900 5.0kb upstream 5.0kb upstream 10575 true scaffold_4: 39581082-39591656 Setaria italica
Seita.4G280900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39586657-39591656 Setaria italica
Seita.4G280900 5.0kb downstream 5.0kb downstream 10575 true scaffold_4: 39576082-39586656 Setaria italica
Seita.4G280900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39576082-39581081 Setaria italica
Seita.4G280900 10.0kb upstream 10.0kb upstream 15575 true scaffold_4: 39581082-39596656 Setaria italica
Seita.4G280900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39586657-39596656 Setaria italica
Seita.4G280900 10.0kb downstream 10.0kb downstream 15575 true scaffold_4: 39571082-39586656 Setaria italica
Seita.4G280900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39571082-39581081 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185300 5267 Panicoideae View MSA
124568402 5269 Grass View MSA
122044456 5273 Angiosperm View MSA
121345722 5274 Embryophyte View MSA
123380259 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.031        
cufflinks 4.655        
cufflinks 6.135       High
cufflinks 7.068       High
cufflinks 5.515        
cufflinks 4.724        
cufflinks 3.997       Low
cufflinks 5.156        
cufflinks 3.619       Low
cufflinks 6.507       High
cufflinks 4.441        
cufflinks 4.5        
cufflinks 6.193       High
cufflinks 4.744        
cufflinks 4.984        
cufflinks 3.849       Low
cufflinks 5.669        
cufflinks 4.717        
cufflinks 4.935        
cufflinks 5.023        

0 Strain