Gene : Seita.4G284900 S. italica v2.2
Defline:  (1 of 1) PTHR15223 - NADH-UBIQUINONE OXIDOREDUCTASE AGGG SUBUNIT Genomic Order:  2849
Name:  ? Seita.4G284900 Secondary Identifier:  ? PAC:32706222
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G284900 0.5kb upstream 0.5kb upstream 3376 true scaffold_4: 39810622-39813997 Setaria italica
Seita.4G284900 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39810622-39811121 Setaria italica
Seita.4G284900 0.5kb downstream 0.5kb downstream 3376 true scaffold_4: 39811122-39814497 Setaria italica
Seita.4G284900 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39813998-39814497 Setaria italica
Seita.4G284900 1.0kb upstream 1.0kb upstream 3876 true scaffold_4: 39810122-39813997 Setaria italica
Seita.4G284900 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39810122-39811121 Setaria italica
Seita.4G284900 1.0kb downstream 1.0kb downstream 3876 true scaffold_4: 39811122-39814997 Setaria italica
Seita.4G284900 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39813998-39814997 Setaria italica
Seita.4G284900 2.0kb upstream 2.0kb upstream 4876 true scaffold_4: 39809122-39813997 Setaria italica
Seita.4G284900 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39809122-39811121 Setaria italica
Seita.4G284900 2.0kb downstream 2.0kb downstream 4876 true scaffold_4: 39811122-39815997 Setaria italica
Seita.4G284900 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39813998-39815997 Setaria italica
Seita.4G284900 5.0kb upstream 5.0kb upstream 7876 true scaffold_4: 39806122-39813997 Setaria italica
Seita.4G284900 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39806122-39811121 Setaria italica
Seita.4G284900 5.0kb downstream 5.0kb downstream 7876 true scaffold_4: 39811122-39818997 Setaria italica
Seita.4G284900 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39813998-39818997 Setaria italica
Seita.4G284900 10.0kb upstream 10.0kb upstream 12876 true scaffold_4: 39801122-39813997 Setaria italica
Seita.4G284900 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39801122-39811121 Setaria italica
Seita.4G284900 10.0kb downstream 10.0kb downstream 12876 true scaffold_4: 39811122-39823997 Setaria italica
Seita.4G284900 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39813998-39823997 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040941 5273 Angiosperm View MSA
122198531 5267 Panicoideae View MSA
124584239 5269 Grass View MSA
121350844 5274 Embryophyte View MSA
123425910 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.492        
cufflinks 21.049     High  
cufflinks 9.329        
cufflinks 13.439     High  
cufflinks 11.243     High  
cufflinks 21.454     High  
cufflinks 10.712        
cufflinks 32.514     High High
cufflinks 16.449     High  
cufflinks 41.593     High High
cufflinks 15.516     High  
cufflinks 17.899     High  
cufflinks 29.817     High High
cufflinks 15.149     High  
cufflinks 17.432     High  
cufflinks 6.063       Low
cufflinks 26.272     High  
cufflinks 3.338       Low
cufflinks 11.389     High  
cufflinks 27.447     High  

0 Strain