Gene : Seita.4G283300 S. italica v2.2
Defline:  (1 of 1) PTHR20922:SF15 - A_TM021B04.14 PROTEIN Genomic Order:  2833
Name:  ? Seita.4G283300 Secondary Identifier:  ? PAC:32708198
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G283300 0.5kb upstream 0.5kb upstream 2646 true scaffold_4: 39723220-39725865 Setaria italica
Seita.4G283300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39725366-39725865 Setaria italica
Seita.4G283300 0.5kb downstream 0.5kb downstream 2646 true scaffold_4: 39722720-39725365 Setaria italica
Seita.4G283300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39722720-39723219 Setaria italica
Seita.4G283300 1.0kb upstream 1.0kb upstream 3146 true scaffold_4: 39723220-39726365 Setaria italica
Seita.4G283300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39725366-39726365 Setaria italica
Seita.4G283300 1.0kb downstream 1.0kb downstream 3146 true scaffold_4: 39722220-39725365 Setaria italica
Seita.4G283300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39722220-39723219 Setaria italica
Seita.4G283300 2.0kb upstream 2.0kb upstream 4146 true scaffold_4: 39723220-39727365 Setaria italica
Seita.4G283300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39725366-39727365 Setaria italica
Seita.4G283300 2.0kb downstream 2.0kb downstream 4146 true scaffold_4: 39721220-39725365 Setaria italica
Seita.4G283300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39721220-39723219 Setaria italica
Seita.4G283300 5.0kb upstream 5.0kb upstream 7146 true scaffold_4: 39723220-39730365 Setaria italica
Seita.4G283300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39725366-39730365 Setaria italica
Seita.4G283300 5.0kb downstream 5.0kb downstream 7146 true scaffold_4: 39718220-39725365 Setaria italica
Seita.4G283300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39718220-39723219 Setaria italica
Seita.4G283300 10.0kb upstream 10.0kb upstream 12146 true scaffold_4: 39723220-39735365 Setaria italica
Seita.4G283300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39725366-39735365 Setaria italica
Seita.4G283300 10.0kb downstream 10.0kb downstream 12146 true scaffold_4: 39713220-39725365 Setaria italica
Seita.4G283300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39713220-39723219 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177971 5267 Panicoideae View MSA
124582138 5269 Grass View MSA
122042389 5273 Angiosperm View MSA
121347257 5274 Embryophyte View MSA
123425918 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.005       Low
cufflinks 5.79        
cufflinks 42.717     High High
cufflinks 46.996     High High
cufflinks 25.91     High  
cufflinks 4.128        
cufflinks 7.962        
cufflinks 29.968     High High
cufflinks 5.984        
cufflinks 4.292        
cufflinks 1.959       Low
cufflinks 4.672        
cufflinks 3.503        
cufflinks 69.506     High High
cufflinks 3.21        
cufflinks 10.993        
cufflinks 3.87        
cufflinks 10.626        
cufflinks 49.274     High High
cufflinks 2.981        

0 Strain