Gene : Seita.4G287700 S. italica v2.2
Defline:  (1 of 1) PTHR11216//PTHR11216:SF77 - EH DOMAIN Genomic Order:  2877
Name:  ? Seita.4G287700 Secondary Identifier:  ? PAC:32709284
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G287700 0.5kb upstream 0.5kb upstream 8928 true scaffold_4: 39992694-40001621 Setaria italica
Seita.4G287700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39992694-39993193 Setaria italica
Seita.4G287700 0.5kb downstream 0.5kb downstream 8928 true scaffold_4: 39993194-40002121 Setaria italica
Seita.4G287700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 40001622-40002121 Setaria italica
Seita.4G287700 1.0kb upstream 1.0kb upstream 9428 true scaffold_4: 39992194-40001621 Setaria italica
Seita.4G287700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39992194-39993193 Setaria italica
Seita.4G287700 1.0kb downstream 1.0kb downstream 9428 true scaffold_4: 39993194-40002621 Setaria italica
Seita.4G287700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 40001622-40002621 Setaria italica
Seita.4G287700 2.0kb upstream 2.0kb upstream 10428 true scaffold_4: 39991194-40001621 Setaria italica
Seita.4G287700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39991194-39993193 Setaria italica
Seita.4G287700 2.0kb downstream 2.0kb downstream 10428 true scaffold_4: 39993194-40003621 Setaria italica
Seita.4G287700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 40001622-40003621 Setaria italica
Seita.4G287700 5.0kb upstream 5.0kb upstream 13428 true scaffold_4: 39988194-40001621 Setaria italica
Seita.4G287700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39988194-39993193 Setaria italica
Seita.4G287700 5.0kb downstream 5.0kb downstream 13428 true scaffold_4: 39993194-40006621 Setaria italica
Seita.4G287700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 40001622-40006621 Setaria italica
Seita.4G287700 10.0kb upstream 10.0kb upstream 18428 true scaffold_4: 39983194-40001621 Setaria italica
Seita.4G287700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39983194-39993193 Setaria italica
Seita.4G287700 10.0kb downstream 10.0kb downstream 18428 true scaffold_4: 39993194-40011621 Setaria italica
Seita.4G287700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 40001622-40011621 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191530 5267 Panicoideae View MSA
124576367 5269 Grass View MSA
122047031 5273 Angiosperm View MSA
121346987 5274 Embryophyte View MSA
123426341 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.702     High High
cufflinks 26.556     High High
cufflinks 16.835     High  
cufflinks 15.031     High Low
cufflinks 16.029     High  
cufflinks 22.196     High  
cufflinks 24.538     High  
cufflinks 15.651     High  
cufflinks 17.914     High  
cufflinks 18.577     High  
cufflinks 29.311     High High
cufflinks 17.062     High  
cufflinks 20.182     High  
cufflinks 13.531       Low
cufflinks 26.92     High High
cufflinks 25.266     High  
cufflinks 15.099     High Low
cufflinks 26.261     High High
cufflinks 14.113     High Low
cufflinks 19.931     High  

0 Strain