Gene : Seita.4G286700 S. italica v2.2
Defline:  (1 of 1) PTHR11465//PTHR11465:SF20 - CATALASE Genomic Order:  2867
Name:  ? Seita.4G286700 Secondary Identifier:  ? PAC:32706692
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica DETOX1-PWY Setaria italica pathologic  
Sitalica DETOX1-PWY-1 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G286700 0.5kb upstream 0.5kb upstream 4529 true scaffold_4: 39940363-39944891 Setaria italica
Seita.4G286700 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39940363-39940862 Setaria italica
Seita.4G286700 0.5kb downstream 0.5kb downstream 4529 true scaffold_4: 39940863-39945391 Setaria italica
Seita.4G286700 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39944892-39945391 Setaria italica
Seita.4G286700 1.0kb upstream 1.0kb upstream 5029 true scaffold_4: 39939863-39944891 Setaria italica
Seita.4G286700 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39939863-39940862 Setaria italica
Seita.4G286700 1.0kb downstream 1.0kb downstream 5029 true scaffold_4: 39940863-39945891 Setaria italica
Seita.4G286700 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39944892-39945891 Setaria italica
Seita.4G286700 2.0kb upstream 2.0kb upstream 6029 true scaffold_4: 39938863-39944891 Setaria italica
Seita.4G286700 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39938863-39940862 Setaria italica
Seita.4G286700 2.0kb downstream 2.0kb downstream 6029 true scaffold_4: 39940863-39946891 Setaria italica
Seita.4G286700 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39944892-39946891 Setaria italica
Seita.4G286700 5.0kb upstream 5.0kb upstream 9029 true scaffold_4: 39935863-39944891 Setaria italica
Seita.4G286700 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39935863-39940862 Setaria italica
Seita.4G286700 5.0kb downstream 5.0kb downstream 9029 true scaffold_4: 39940863-39949891 Setaria italica
Seita.4G286700 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39944892-39949891 Setaria italica
Seita.4G286700 10.0kb upstream 10.0kb upstream 14029 true scaffold_4: 39930863-39944891 Setaria italica
Seita.4G286700 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39930863-39940862 Setaria italica
Seita.4G286700 10.0kb downstream 10.0kb downstream 14029 true scaffold_4: 39940863-39954891 Setaria italica
Seita.4G286700 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39944892-39954891 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040958 5273 Angiosperm View MSA
122185448 5267 Panicoideae View MSA
124575964 5269 Grass View MSA
121344781 5274 Embryophyte View MSA
123424047 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 185.336     High  
cufflinks 88.926     High Low
cufflinks 270.014     High High
cufflinks 258.316     High High
cufflinks 176.272     High  
cufflinks 82.242     High Low
cufflinks 83.481     High Low
cufflinks 97.147     High Low
cufflinks 88.517     High Low
cufflinks 148.429     High  
cufflinks 236.651     High  
cufflinks 191.727     High  
cufflinks 250.406     High High
cufflinks 187.992     High  
cufflinks 158.583     High  
cufflinks 86.305     High Low
cufflinks 169.802     High  
cufflinks 287.875     High High
cufflinks 205.076     High  
cufflinks 143.852     High  

0 Strain