Gene : Seita.4G287300 S. italica v2.2
Defline:  (1 of 1) 4.6.1.16 - tRNA-intron lyase / tRNA splicing endonuclease Genomic Order:  2873
Name:  ? Seita.4G287300 Secondary Identifier:  ? PAC:32708326
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-6689 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G287300 0.5kb upstream 0.5kb upstream 2707 true scaffold_4: 39976502-39979208 Setaria italica
Seita.4G287300 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 39978709-39979208 Setaria italica
Seita.4G287300 0.5kb downstream 0.5kb downstream 2707 true scaffold_4: 39976002-39978708 Setaria italica
Seita.4G287300 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 39976002-39976501 Setaria italica
Seita.4G287300 1.0kb upstream 1.0kb upstream 3207 true scaffold_4: 39976502-39979708 Setaria italica
Seita.4G287300 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 39978709-39979708 Setaria italica
Seita.4G287300 1.0kb downstream 1.0kb downstream 3207 true scaffold_4: 39975502-39978708 Setaria italica
Seita.4G287300 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 39975502-39976501 Setaria italica
Seita.4G287300 2.0kb upstream 2.0kb upstream 4207 true scaffold_4: 39976502-39980708 Setaria italica
Seita.4G287300 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 39978709-39980708 Setaria italica
Seita.4G287300 2.0kb downstream 2.0kb downstream 4207 true scaffold_4: 39974502-39978708 Setaria italica
Seita.4G287300 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 39974502-39976501 Setaria italica
Seita.4G287300 5.0kb upstream 5.0kb upstream 7207 true scaffold_4: 39976502-39983708 Setaria italica
Seita.4G287300 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 39978709-39983708 Setaria italica
Seita.4G287300 5.0kb downstream 5.0kb downstream 7207 true scaffold_4: 39971502-39978708 Setaria italica
Seita.4G287300 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 39971502-39976501 Setaria italica
Seita.4G287300 10.0kb upstream 10.0kb upstream 12207 true scaffold_4: 39976502-39988708 Setaria italica
Seita.4G287300 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 39978709-39988708 Setaria italica
Seita.4G287300 10.0kb downstream 10.0kb downstream 12207 true scaffold_4: 39966502-39978708 Setaria italica
Seita.4G287300 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 39966502-39976501 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041240 5273 Angiosperm View MSA
122175925 5267 Panicoideae View MSA
124584479 5269 Grass View MSA
123429143 5275 Viridiplantae View MSA
121344093 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.532        
cufflinks 3.848       High
cufflinks 2.236        
cufflinks 3.0        
cufflinks 2.789        
cufflinks 4.986       High
cufflinks 2.143       Low
cufflinks 3.879       High
cufflinks 2.669        
cufflinks 1.764       Low
cufflinks 2.296        
cufflinks 3.176        
cufflinks 3.701        
cufflinks 2.557        
cufflinks 2.912        
cufflinks 2.42        
cufflinks 3.976       High
cufflinks 2.705        
cufflinks 1.834       Low
cufflinks 3.903       High

0 Strain