Gene : Seita.4G290100 S. italica v2.2
Genomic Order:  2901 Name:  ? Seita.4G290100
Secondary Identifier:  ? PAC:32708998
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G290100 0.5kb upstream 0.5kb upstream 1267 true scaffold_4: 40120459-40121725 Setaria italica
Seita.4G290100 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 40120459-40120958 Setaria italica
Seita.4G290100 0.5kb downstream 0.5kb downstream 1267 true scaffold_4: 40120959-40122225 Setaria italica
Seita.4G290100 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 40121726-40122225 Setaria italica
Seita.4G290100 1.0kb upstream 1.0kb upstream 1767 true scaffold_4: 40119959-40121725 Setaria italica
Seita.4G290100 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 40119959-40120958 Setaria italica
Seita.4G290100 1.0kb downstream 1.0kb downstream 1767 true scaffold_4: 40120959-40122725 Setaria italica
Seita.4G290100 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 40121726-40122725 Setaria italica
Seita.4G290100 2.0kb upstream 2.0kb upstream 2767 true scaffold_4: 40118959-40121725 Setaria italica
Seita.4G290100 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 40118959-40120958 Setaria italica
Seita.4G290100 2.0kb downstream 2.0kb downstream 2767 true scaffold_4: 40120959-40123725 Setaria italica
Seita.4G290100 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 40121726-40123725 Setaria italica
Seita.4G290100 5.0kb upstream 5.0kb upstream 5767 true scaffold_4: 40115959-40121725 Setaria italica
Seita.4G290100 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 40115959-40120958 Setaria italica
Seita.4G290100 5.0kb downstream 5.0kb downstream 5767 true scaffold_4: 40120959-40126725 Setaria italica
Seita.4G290100 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 40121726-40126725 Setaria italica
Seita.4G290100 10.0kb upstream 10.0kb upstream 10767 true scaffold_4: 40110959-40121725 Setaria italica
Seita.4G290100 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 40110959-40120958 Setaria italica
Seita.4G290100 10.0kb downstream 10.0kb downstream 10767 true scaffold_4: 40120959-40131725 Setaria italica
Seita.4G290100 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 40121726-40131725 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180798 5267 Panicoideae View MSA
124586729 5269 Grass View MSA
122050156 5273 Angiosperm View MSA
121311767 5274 Embryophyte View MSA
123349020 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.272        
cufflinks 6.879        
cufflinks 0.718       Low
cufflinks 0.605       Low
cufflinks 2.439        
cufflinks 7.818        
cufflinks 4.6        
cufflinks 4.215        
cufflinks 5.708        
cufflinks 10.131       High
cufflinks 7.592        
cufflinks 7.132        
cufflinks 6.552        
cufflinks 1.748       Low
cufflinks 4.82        
cufflinks 4.646        
cufflinks 5.635        
cufflinks 7.386        
cufflinks 1.189       Low
cufflinks 5.535        

0 Strain