Gene : Seita.4G291200 S. italica v2.2
Defline:  (1 of 2) PTHR13861 - VACUOLAR ATP SYNTHASE SUBUNIT F Genomic Order:  2912
Name:  ? Seita.4G291200 Secondary Identifier:  ? PAC:32709442
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica PWY-7219 Setaria italica pathologic  
Sitalica PWY-7229 Setaria italica pathologic  
Sitalica PWY-841 Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G291200 0.5kb upstream 0.5kb upstream 2521 true scaffold_4: 40175923-40178443 Setaria italica
Seita.4G291200 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 40177944-40178443 Setaria italica
Seita.4G291200 0.5kb downstream 0.5kb downstream 2521 true scaffold_4: 40175423-40177943 Setaria italica
Seita.4G291200 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 40175423-40175922 Setaria italica
Seita.4G291200 1.0kb upstream 1.0kb upstream 3021 true scaffold_4: 40175923-40178943 Setaria italica
Seita.4G291200 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 40177944-40178943 Setaria italica
Seita.4G291200 1.0kb downstream 1.0kb downstream 3021 true scaffold_4: 40174923-40177943 Setaria italica
Seita.4G291200 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 40174923-40175922 Setaria italica
Seita.4G291200 2.0kb upstream 2.0kb upstream 4021 true scaffold_4: 40175923-40179943 Setaria italica
Seita.4G291200 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 40177944-40179943 Setaria italica
Seita.4G291200 2.0kb downstream 2.0kb downstream 4021 true scaffold_4: 40173923-40177943 Setaria italica
Seita.4G291200 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 40173923-40175922 Setaria italica
Seita.4G291200 5.0kb upstream 5.0kb upstream 7021 true scaffold_4: 40175923-40182943 Setaria italica
Seita.4G291200 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 40177944-40182943 Setaria italica
Seita.4G291200 5.0kb downstream 5.0kb downstream 7021 true scaffold_4: 40170923-40177943 Setaria italica
Seita.4G291200 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 40170923-40175922 Setaria italica
Seita.4G291200 10.0kb upstream 10.0kb upstream 12021 true scaffold_4: 40175923-40187943 Setaria italica
Seita.4G291200 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 40177944-40187943 Setaria italica
Seita.4G291200 10.0kb downstream 10.0kb downstream 12021 true scaffold_4: 40165923-40177943 Setaria italica
Seita.4G291200 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 40165923-40175922 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185361 5267 Panicoideae View MSA
124583710 5269 Grass View MSA
122044374 5273 Angiosperm View MSA
121344263 5274 Embryophyte View MSA
123428206 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.537     High  
cufflinks 44.743     High  
cufflinks 19.445     High Low
cufflinks 20.277     High Low
cufflinks 18.357     High Low
cufflinks 42.333     High  
cufflinks 28.497     High  
cufflinks 39.257     High  
cufflinks 26.008     High  
cufflinks 46.02     High  
cufflinks 45.433     High  
cufflinks 44.78     High  
cufflinks 88.081     High High
cufflinks 24.756     High  
cufflinks 49.397     High  
cufflinks 23.449     High  
cufflinks 67.595     High High
cufflinks 16.132     High Low
cufflinks 22.874     High  
cufflinks 61.712     High High

0 Strain