Gene : Seita.4G292000 S. italica v2.2
Defline:  (1 of 1) PTHR19282:SF227 - TETRASPANIN-18-RELATED Genomic Order:  2920
Name:  ? Seita.4G292000 Secondary Identifier:  ? PAC:32708979
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.4G292000 0.5kb upstream 0.5kb upstream 2720 true scaffold_4: 40220051-40222770 Setaria italica
Seita.4G292000 0.5kb upstream 0.5kb upstream 500 false scaffold_4: 40220051-40220550 Setaria italica
Seita.4G292000 0.5kb downstream 0.5kb downstream 2720 true scaffold_4: 40220551-40223270 Setaria italica
Seita.4G292000 0.5kb downstream 0.5kb downstream 500 false scaffold_4: 40222771-40223270 Setaria italica
Seita.4G292000 1.0kb upstream 1.0kb upstream 3220 true scaffold_4: 40219551-40222770 Setaria italica
Seita.4G292000 1.0kb upstream 1.0kb upstream 1000 false scaffold_4: 40219551-40220550 Setaria italica
Seita.4G292000 1.0kb downstream 1.0kb downstream 3220 true scaffold_4: 40220551-40223770 Setaria italica
Seita.4G292000 1.0kb downstream 1.0kb downstream 1000 false scaffold_4: 40222771-40223770 Setaria italica
Seita.4G292000 2.0kb upstream 2.0kb upstream 4220 true scaffold_4: 40218551-40222770 Setaria italica
Seita.4G292000 2.0kb upstream 2.0kb upstream 2000 false scaffold_4: 40218551-40220550 Setaria italica
Seita.4G292000 2.0kb downstream 2.0kb downstream 4220 true scaffold_4: 40220551-40224770 Setaria italica
Seita.4G292000 2.0kb downstream 2.0kb downstream 2000 false scaffold_4: 40222771-40224770 Setaria italica
Seita.4G292000 5.0kb upstream 5.0kb upstream 7220 true scaffold_4: 40215551-40222770 Setaria italica
Seita.4G292000 5.0kb upstream 5.0kb upstream 5000 false scaffold_4: 40215551-40220550 Setaria italica
Seita.4G292000 5.0kb downstream 5.0kb downstream 7220 true scaffold_4: 40220551-40227770 Setaria italica
Seita.4G292000 5.0kb downstream 5.0kb downstream 5000 false scaffold_4: 40222771-40227770 Setaria italica
Seita.4G292000 10.0kb upstream 10.0kb upstream 12220 true scaffold_4: 40210551-40222770 Setaria italica
Seita.4G292000 10.0kb upstream 10.0kb upstream 10000 false scaffold_4: 40210551-40220550 Setaria italica
Seita.4G292000 10.0kb downstream 10.0kb downstream 12220 true scaffold_4: 40220551-40232770 Setaria italica
Seita.4G292000 10.0kb downstream 10.0kb downstream 10000 false scaffold_4: 40222771-40232770 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177917 5267 Panicoideae View MSA
124573823 5269 Grass View MSA
122050104 5273 Angiosperm View MSA
121351335 5274 Embryophyte View MSA
123424447 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 36.11     High  
cufflinks 32.206     High  
cufflinks 40.687     High  
cufflinks 40.317     High  
cufflinks 32.044     High  
cufflinks 30.723     High  
cufflinks 29.793     High  
cufflinks 25.655     High Low
cufflinks 16.051     High Low
cufflinks 52.458     High High
cufflinks 46.671     High High
cufflinks 28.342     High  
cufflinks 48.207     High High
cufflinks 40.984     High  
cufflinks 38.02     High  
cufflinks 26.369     High  
cufflinks 30.721     High  
cufflinks 30.724     High  
cufflinks 37.597     High  
cufflinks 35.502     High  

0 Strain