Gene : Seita.5G002600 S. italica v2.2
Defline:  (1 of 1) PTHR33785:SF1 - GENOMIC DNA, CHROMOSOME 3, BAC CLONE:F4B12 Genomic Order:  26
Name:  ? Seita.5G002600 Secondary Identifier:  ? PAC:32681195
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G002600 0.5kb upstream 0.5kb upstream 1427 true scaffold_5: 217789-219215 Setaria italica
Seita.5G002600 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 218716-219215 Setaria italica
Seita.5G002600 0.5kb downstream 0.5kb downstream 1427 true scaffold_5: 217289-218715 Setaria italica
Seita.5G002600 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 217289-217788 Setaria italica
Seita.5G002600 1.0kb upstream 1.0kb upstream 1927 true scaffold_5: 217789-219715 Setaria italica
Seita.5G002600 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 218716-219715 Setaria italica
Seita.5G002600 1.0kb downstream 1.0kb downstream 1927 true scaffold_5: 216789-218715 Setaria italica
Seita.5G002600 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 216789-217788 Setaria italica
Seita.5G002600 2.0kb upstream 2.0kb upstream 2927 true scaffold_5: 217789-220715 Setaria italica
Seita.5G002600 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 218716-220715 Setaria italica
Seita.5G002600 2.0kb downstream 2.0kb downstream 2927 true scaffold_5: 215789-218715 Setaria italica
Seita.5G002600 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 215789-217788 Setaria italica
Seita.5G002600 5.0kb upstream 5.0kb upstream 5927 true scaffold_5: 217789-223715 Setaria italica
Seita.5G002600 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 218716-223715 Setaria italica
Seita.5G002600 5.0kb downstream 5.0kb downstream 5927 true scaffold_5: 212789-218715 Setaria italica
Seita.5G002600 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 212789-217788 Setaria italica
Seita.5G002600 10.0kb upstream 10.0kb upstream 10927 true scaffold_5: 217789-228715 Setaria italica
Seita.5G002600 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 218716-228715 Setaria italica
Seita.5G002600 10.0kb downstream 10.0kb downstream 10927 true scaffold_5: 207789-218715 Setaria italica
Seita.5G002600 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 207789-217788 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191267 5267 Panicoideae View MSA
124569088 5269 Grass View MSA
122048968 5273 Angiosperm View MSA
121350568 5274 Embryophyte View MSA
123381799 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.856        
cufflinks 0.322       Low
cufflinks 3.124        
cufflinks 3.546        
cufflinks 1.934        
cufflinks 0.255       Low
cufflinks 1.208        
cufflinks 1.555        
cufflinks 2.376        
cufflinks 3.903        
cufflinks 1.477        
cufflinks 3.016        
cufflinks 3.596        
cufflinks 4.267       High
cufflinks 2.882        
cufflinks 1.381        
cufflinks 3.733        
cufflinks 1.81        
cufflinks 1.685        
cufflinks 3.598        

0 Strain