Gene : Seita.5G081200 S. italica v2.2
Defline:  (1 of 1) PTHR11946:SF7 - LEUCINE--TRNA LIGASE, MITOCHONDRIAL-RELATED Genomic Order:  812
Name:  ? Seita.5G081200 Secondary Identifier:  ? PAC:32685038
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G081200 0.5kb upstream 0.5kb upstream 9012 true scaffold_5: 6914770-6923781 Setaria italica
Seita.5G081200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6923282-6923781 Setaria italica
Seita.5G081200 0.5kb downstream 0.5kb downstream 9012 true scaffold_5: 6914270-6923281 Setaria italica
Seita.5G081200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6914270-6914769 Setaria italica
Seita.5G081200 1.0kb upstream 1.0kb upstream 9512 true scaffold_5: 6914770-6924281 Setaria italica
Seita.5G081200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6923282-6924281 Setaria italica
Seita.5G081200 1.0kb downstream 1.0kb downstream 9512 true scaffold_5: 6913770-6923281 Setaria italica
Seita.5G081200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6913770-6914769 Setaria italica
Seita.5G081200 2.0kb upstream 2.0kb upstream 10512 true scaffold_5: 6914770-6925281 Setaria italica
Seita.5G081200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6923282-6925281 Setaria italica
Seita.5G081200 2.0kb downstream 2.0kb downstream 10512 true scaffold_5: 6912770-6923281 Setaria italica
Seita.5G081200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6912770-6914769 Setaria italica
Seita.5G081200 5.0kb upstream 5.0kb upstream 13512 true scaffold_5: 6914770-6928281 Setaria italica
Seita.5G081200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6923282-6928281 Setaria italica
Seita.5G081200 5.0kb downstream 5.0kb downstream 13512 true scaffold_5: 6909770-6923281 Setaria italica
Seita.5G081200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6909770-6914769 Setaria italica
Seita.5G081200 10.0kb upstream 10.0kb upstream 18512 true scaffold_5: 6914770-6933281 Setaria italica
Seita.5G081200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6923282-6933281 Setaria italica
Seita.5G081200 10.0kb downstream 10.0kb downstream 18512 true scaffold_5: 6904770-6923281 Setaria italica
Seita.5G081200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6904770-6914769 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041369 5273 Angiosperm View MSA
122190357 5267 Panicoideae View MSA
124571312 5269 Grass View MSA
121347479 5274 Embryophyte View MSA
123424257 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.312        
cufflinks 5.123        
cufflinks 3.094        
cufflinks 1.108       Low
cufflinks 6.092        
cufflinks 4.867        
cufflinks 14.8     High High
cufflinks 9.716        
cufflinks 22.636     High High
cufflinks 3.669        
cufflinks 4.856        
cufflinks 0.928       Low
cufflinks 0.9       Low
cufflinks 6.221        
cufflinks 1.068       Low
cufflinks 14.235     High High
cufflinks 2.28        
cufflinks 4.524        
cufflinks 1.229       Low
cufflinks 1.136       Low

0 Strain