Gene : Seita.5G081400 S. italica v2.2
Defline:  (1 of 1) PTHR11777:SF7 - THREONYL AND ALANYL TRNA SYNTHETASE SECOND ADDITIONAL DOMAIN-CONTAINING PROTEIN Genomic Order:  814
Name:  ? Seita.5G081400 Secondary Identifier:  ? PAC:32685389
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sitalica TRNA-CHARGING-PWY Setaria italica pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G081400 0.5kb upstream 0.5kb upstream 2708 true scaffold_5: 6924461-6927168 Setaria italica
Seita.5G081400 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 6926669-6927168 Setaria italica
Seita.5G081400 0.5kb downstream 0.5kb downstream 2708 true scaffold_5: 6923961-6926668 Setaria italica
Seita.5G081400 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 6923961-6924460 Setaria italica
Seita.5G081400 1.0kb upstream 1.0kb upstream 3208 true scaffold_5: 6924461-6927668 Setaria italica
Seita.5G081400 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 6926669-6927668 Setaria italica
Seita.5G081400 1.0kb downstream 1.0kb downstream 3208 true scaffold_5: 6923461-6926668 Setaria italica
Seita.5G081400 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 6923461-6924460 Setaria italica
Seita.5G081400 2.0kb upstream 2.0kb upstream 4208 true scaffold_5: 6924461-6928668 Setaria italica
Seita.5G081400 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 6926669-6928668 Setaria italica
Seita.5G081400 2.0kb downstream 2.0kb downstream 4208 true scaffold_5: 6922461-6926668 Setaria italica
Seita.5G081400 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 6922461-6924460 Setaria italica
Seita.5G081400 5.0kb upstream 5.0kb upstream 7208 true scaffold_5: 6924461-6931668 Setaria italica
Seita.5G081400 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 6926669-6931668 Setaria italica
Seita.5G081400 5.0kb downstream 5.0kb downstream 7208 true scaffold_5: 6919461-6926668 Setaria italica
Seita.5G081400 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 6919461-6924460 Setaria italica
Seita.5G081400 10.0kb upstream 10.0kb upstream 12208 true scaffold_5: 6924461-6936668 Setaria italica
Seita.5G081400 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 6926669-6936668 Setaria italica
Seita.5G081400 10.0kb downstream 10.0kb downstream 12208 true scaffold_5: 6914461-6926668 Setaria italica
Seita.5G081400 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 6914461-6924460 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041267 5273 Angiosperm View MSA
122175505 5267 Panicoideae View MSA
124575580 5269 Grass View MSA
121346902 5274 Embryophyte View MSA
123425374 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.166        
cufflinks 2.074        
cufflinks 2.496        
cufflinks 2.957        
cufflinks 2.274        
cufflinks 2.302        
cufflinks 1.999        
cufflinks 1.958        
cufflinks 1.719        
cufflinks 4.835        
cufflinks 2.195        
cufflinks 3.565        
cufflinks 2.552        
cufflinks 8.716       High
cufflinks 6.213       High
cufflinks 1.414       Low
cufflinks 13.894       High
cufflinks 1.987        
cufflinks 5.184        
cufflinks 4.323        

0 Strain