Gene : Seita.5G089200 S. italica v2.2
Defline:  (1 of 1) PTHR12804//PTHR12804:SF2 - MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23 Genomic Order:  892
Name:  ? Seita.5G089200 Secondary Identifier:  ? PAC:32680945
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G089200 0.5kb upstream 0.5kb upstream 4794 true scaffold_5: 7612231-7617024 Setaria italica
Seita.5G089200 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 7612231-7612730 Setaria italica
Seita.5G089200 0.5kb downstream 0.5kb downstream 4794 true scaffold_5: 7612731-7617524 Setaria italica
Seita.5G089200 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 7617025-7617524 Setaria italica
Seita.5G089200 1.0kb upstream 1.0kb upstream 5294 true scaffold_5: 7611731-7617024 Setaria italica
Seita.5G089200 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 7611731-7612730 Setaria italica
Seita.5G089200 1.0kb downstream 1.0kb downstream 5294 true scaffold_5: 7612731-7618024 Setaria italica
Seita.5G089200 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 7617025-7618024 Setaria italica
Seita.5G089200 2.0kb upstream 2.0kb upstream 6294 true scaffold_5: 7610731-7617024 Setaria italica
Seita.5G089200 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 7610731-7612730 Setaria italica
Seita.5G089200 2.0kb downstream 2.0kb downstream 6294 true scaffold_5: 7612731-7619024 Setaria italica
Seita.5G089200 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 7617025-7619024 Setaria italica
Seita.5G089200 5.0kb upstream 5.0kb upstream 9294 true scaffold_5: 7607731-7617024 Setaria italica
Seita.5G089200 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 7607731-7612730 Setaria italica
Seita.5G089200 5.0kb downstream 5.0kb downstream 9294 true scaffold_5: 7612731-7622024 Setaria italica
Seita.5G089200 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 7617025-7622024 Setaria italica
Seita.5G089200 10.0kb upstream 10.0kb upstream 14294 true scaffold_5: 7602731-7617024 Setaria italica
Seita.5G089200 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 7602731-7612730 Setaria italica
Seita.5G089200 10.0kb downstream 10.0kb downstream 14294 true scaffold_5: 7612731-7627024 Setaria italica
Seita.5G089200 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 7617025-7627024 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122028537 5273 Angiosperm View MSA
122177778 5267 Panicoideae View MSA
124568735 5269 Grass View MSA
121298008 5274 Embryophyte View MSA
123336014 5275 Viridiplantae View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.779        
cufflinks 2.82       High
cufflinks 0.505       Low
cufflinks 0.392       Low
cufflinks 0.312       Low
cufflinks 2.883       High
cufflinks 0.722        
cufflinks 1.685        
cufflinks 0.709        
cufflinks 3.346       High
cufflinks 1.403        
cufflinks 2.514        
cufflinks 1.933        
cufflinks 0.944        
cufflinks 2.283        
cufflinks 0.975        
cufflinks 3.094       High
cufflinks 0.811        
cufflinks 0.606       Low
cufflinks 2.233        

0 Strain