Gene : Seita.5G090500 S. italica v2.2
Defline:  (1 of 22) PTHR23155//PTHR23155:SF541 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN Genomic Order:  905
Name:  ? Seita.5G090500 Secondary Identifier:  ? PAC:32683100
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G090500 0.5kb upstream 0.5kb upstream 5141 true scaffold_5: 7712580-7717720 Setaria italica
Seita.5G090500 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 7712580-7713079 Setaria italica
Seita.5G090500 0.5kb downstream 0.5kb downstream 5141 true scaffold_5: 7713080-7718220 Setaria italica
Seita.5G090500 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 7717721-7718220 Setaria italica
Seita.5G090500 1.0kb upstream 1.0kb upstream 5641 true scaffold_5: 7712080-7717720 Setaria italica
Seita.5G090500 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 7712080-7713079 Setaria italica
Seita.5G090500 1.0kb downstream 1.0kb downstream 5641 true scaffold_5: 7713080-7718720 Setaria italica
Seita.5G090500 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 7717721-7718720 Setaria italica
Seita.5G090500 2.0kb upstream 2.0kb upstream 6641 true scaffold_5: 7711080-7717720 Setaria italica
Seita.5G090500 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 7711080-7713079 Setaria italica
Seita.5G090500 2.0kb downstream 2.0kb downstream 6641 true scaffold_5: 7713080-7719720 Setaria italica
Seita.5G090500 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 7717721-7719720 Setaria italica
Seita.5G090500 5.0kb upstream 5.0kb upstream 9641 true scaffold_5: 7708080-7717720 Setaria italica
Seita.5G090500 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 7708080-7713079 Setaria italica
Seita.5G090500 5.0kb downstream 5.0kb downstream 9641 true scaffold_5: 7713080-7722720 Setaria italica
Seita.5G090500 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 7717721-7722720 Setaria italica
Seita.5G090500 10.0kb upstream 10.0kb upstream 14641 true scaffold_5: 7703080-7717720 Setaria italica
Seita.5G090500 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 7703080-7713079 Setaria italica
Seita.5G090500 10.0kb downstream 10.0kb downstream 14641 true scaffold_5: 7713080-7727720 Setaria italica
Seita.5G090500 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 7717721-7727720 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199125 5267 Panicoideae View MSA
124590789 5269 Grass View MSA
122051706 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.014     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.004     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.002     Low  
cufflinks 0.002     Low  
cufflinks 0.01     Low  
cufflinks 0.002     Low  
cufflinks 2.097       High
cufflinks 0.011     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.011     Low  
cufflinks 0.002     Low  
cufflinks 0.002     Low  
cufflinks 0.004     Low  
cufflinks 0.019     Low  
cufflinks 0.0     Not Expressed Not Expressed

0 Strain