Gene : Seita.5G095900 S. italica v2.2
Defline:  (1 of 1) PTHR10994//PTHR10994:SF74 - RETICULON Genomic Order:  959
Name:  ? Seita.5G095900 Secondary Identifier:  ? PAC:32685311
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Seita.5G095900 0.5kb upstream 0.5kb upstream 2168 true scaffold_5: 8103126-8105293 Setaria italica
Seita.5G095900 0.5kb upstream 0.5kb upstream 500 false scaffold_5: 8103126-8103625 Setaria italica
Seita.5G095900 0.5kb downstream 0.5kb downstream 2168 true scaffold_5: 8103626-8105793 Setaria italica
Seita.5G095900 0.5kb downstream 0.5kb downstream 500 false scaffold_5: 8105294-8105793 Setaria italica
Seita.5G095900 1.0kb upstream 1.0kb upstream 2668 true scaffold_5: 8102626-8105293 Setaria italica
Seita.5G095900 1.0kb upstream 1.0kb upstream 1000 false scaffold_5: 8102626-8103625 Setaria italica
Seita.5G095900 1.0kb downstream 1.0kb downstream 2668 true scaffold_5: 8103626-8106293 Setaria italica
Seita.5G095900 1.0kb downstream 1.0kb downstream 1000 false scaffold_5: 8105294-8106293 Setaria italica
Seita.5G095900 2.0kb upstream 2.0kb upstream 3668 true scaffold_5: 8101626-8105293 Setaria italica
Seita.5G095900 2.0kb upstream 2.0kb upstream 2000 false scaffold_5: 8101626-8103625 Setaria italica
Seita.5G095900 2.0kb downstream 2.0kb downstream 3668 true scaffold_5: 8103626-8107293 Setaria italica
Seita.5G095900 2.0kb downstream 2.0kb downstream 2000 false scaffold_5: 8105294-8107293 Setaria italica
Seita.5G095900 5.0kb upstream 5.0kb upstream 6668 true scaffold_5: 8098626-8105293 Setaria italica
Seita.5G095900 5.0kb upstream 5.0kb upstream 5000 false scaffold_5: 8098626-8103625 Setaria italica
Seita.5G095900 5.0kb downstream 5.0kb downstream 6668 true scaffold_5: 8103626-8110293 Setaria italica
Seita.5G095900 5.0kb downstream 5.0kb downstream 5000 false scaffold_5: 8105294-8110293 Setaria italica
Seita.5G095900 10.0kb upstream 10.0kb upstream 11668 true scaffold_5: 8093626-8105293 Setaria italica
Seita.5G095900 10.0kb upstream 10.0kb upstream 10000 false scaffold_5: 8093626-8103625 Setaria italica
Seita.5G095900 10.0kb downstream 10.0kb downstream 11668 true scaffold_5: 8103626-8115293 Setaria italica
Seita.5G095900 10.0kb downstream 10.0kb downstream 10000 false scaffold_5: 8105294-8115293 Setaria italica

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122192102 5267 Panicoideae View MSA
124579937 5269 Grass View MSA
122048457 5273 Angiosperm View MSA
123429002 5275 Viridiplantae View MSA
121351639 5274 Embryophyte View MSA

20 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.102        
cufflinks 3.071        
cufflinks 0.066     Low Low
cufflinks 0.26       Low
cufflinks 1.007        
cufflinks 4.027        
cufflinks 5.188        
cufflinks 4.156        
cufflinks 7.316       High
cufflinks 7.761       High
cufflinks 3.52        
cufflinks 1.215        
cufflinks 5.396        
cufflinks 0.065     Low Low
cufflinks 2.603        
cufflinks 1.827        
cufflinks 1.655        
cufflinks 1.075        
cufflinks 0.164       Low
cufflinks 1.666        

0 Strain